Dryobates pubescens (Downy woodpecker): 104309259
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Entry
104309259 CDS
T08526
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dpub04040
]
104309259 (SCN1A)
Ion channels [BR:
dpub04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104309259 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
New_glue
SieB
FraC
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
104309259
NCBI-ProteinID:
XP_009908867
LinkDB
All DBs
Position
Unknown
AA seq
2014 aa
AA seq
DB search
MEQPVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNSKQDRKDNDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLDTNITSQLNSTI
GENGTLVNSTVTPFDWKGYIEDESHFYFLEGQADALLCGNSSDAGQCPEGYTCVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPS
AGGEAAGLSESSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRR
KGFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDIGSENDFA
DDEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVV
SLVGGPSVPTSPVGQLLPEVIIDKPATDDNGATTETEMRKRISGSFHVSMDFLEVPALRK
RAMSIARILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVD
LAITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEG
WNIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGE
WIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNN
LQIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLDDLNNKNSCISNHTTVELSK
DHDYIKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEE
FSSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCC
QVSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTML
EYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAI
KSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGK
FYYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFK
GWMDIMYAAIDSRDVSTQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK
FGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILIC
LNMVTMMVETDDQSEEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVV
ILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFN
IGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAP
ILNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVA
TEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAM
DLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKR
KQEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEK
TDITASTAVCPPSYDRVTRPVKEKHEKEEKDGQK
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggagcagccagtgcttgtaccaccaggaccagacagcttccagtacttcactagagag
tctcttgcagctattgaacagcgcattgctgcagaaaaagctaagaattctaaacaagat
cgtaaagacaatgatgatgaaaatgggccaaagccaaacagcgatttggaggcaggaaaa
acacttccctttatatacggcgacatacctccaggaatggtgtctgagcccttggaagac
atggacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccctgtacatgttaactcctttcaatcctcttagaaaa
atagctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgtgtatttatgacaatgagtaaccctccagattggacaaagaatgtagagtat
acgttcactggaatttacacatttgagtcactcataaaaatcattgcaaggggcttttgc
ttagaagattttacctttcttcgagatccatggaactggcttgatttcactgtcattacc
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcttgaagactatcgtgggagcc
ctaattcagtctgtgaagaagctgtcggatgtaatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggcaatttgaggaataaatgcctgcag
tggcctccagaaaattttactttggatacaaacattacttcccagctaaacagcaccata
ggtgaaaatggtacattagttaattcaacagtgactccatttgactggaaggggtacatt
gaagatgaaagtcatttttattttctggaagggcaagctgatgctctgctttgtggaaac
agttctgatgctggccagtgcccagaaggatacacatgcgtgaaagctggtagaaacccc
aattatggctatacaagttttgacactttcagctgggctttcttgtcactgtttcgattg
atgactcaggacttctgggaaaacctttatcaattgacactacgtgccgctgggaagaca
tacatgatattttttgttctggtgatttttctgggttctttctatctgatcaacttgatc
ctggctgtggttgccatggcctatgaagaacagaatcaagcaactatggaagaagcagag
cagaaagaggcagaatttcaacagatgctggaacagctaaagaagcagcaagaagcagct
caggcagcagcggtggcagcagcagcagtaacagcatcagcagagtccagggagcccagc
gctggaggagaagcagcagggctctcagaaagttcttcggaggcatcaaaattgagctca
aagagtgcaaaagagaggagaaatagaaggaaaaaacgaaaacagaaggaacagtctgga
ggtgaggaaaaagatgaagatgaatttcacaagtctgaatcagaagacagcatcagaagg
aaaggtttccgattatctatcgaaggcaatagactgacgtatgaaaagaagtattcttct
ccccatcagtctttgctgagcattcgaggctccctcttctctccaaggcgcaacagcaga
acaagtcttttcagcttcagaggtagagcaaaggatataggatcagagaatgactttgct
gatgatgagcacagcacttttgaagacaatgatagcagaagagattctctttttgtgccg
cgcagacacggtgaacggcgcaacagtaacattagtcaggccagtaggtcatccaggatg
ctggcagtgtttccagtgaatgggaagatgcacagcactgtggattgcaatggggtggtt
tccctggttggtggaccatcagttcctacatcgcctgttggacagcttctgccagaggtg
ataatagataaaccagctactgatgacaatggagccactacagaaacagaaatgaggaag
agaatatctggctcttttcatgtttctatggacttcctggaagtcccagctttaaggaaa
agagccatgagtattgctaggatcctcacaaatactgtggaagaacttgaagaatcaaga
cagaaatgcccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagt
ccacactggttaaaagtaaaacatatcgtcaacttagtggtaatggacccgtttgttgac
ctggctattacaatttgcattgttttaaatacactctttatggctatggaacattatcca
atgaccgatgaatttaacaacgtgctttcagttggaaatttggtcttcactggaatcttc
acagcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggc
tggaatatttttgatggttttattgtaacccttagcttggttgagcttggtcttgcagat
gtggaagggctctcagttctccgatcattcagattgttgcgagttttcaaactggcaaaa
tcttggccaactctaaatatgctaattaagattattggcaactcagtgggagctttggga
aatctgaccctggtgctggccatcattgtgttcatttttgctgtggttggaatgcagctg
tttgggaaaaactacaaggaatgtgtctgtaaaattgcaagtgactgtgtgcttccacgc
tggcacatgcaagatttttttcactcttttttgatcgtatttcgagtgctgtgtggagaa
tggatagaaacaatgtgggactgcatggaggttgctggccaagccatgtgccttactgtt
ttcatgatggtcatggtgattggaaacctagtggtactgaacctatttttggccttgcta
ttgagctcattcagtgcagacaaccttgccgtgacagatgatgacaatgaaatgaataac
ctccaaattgctgtagcaagaatgcagaagggcatagattatgtgaaaagaaaagcacgt
gaattcatccagaaagcttttgttaaaaaacaaaaagctttagatgaaatcaaaccactt
gatgatttgaacaacaaaaatagctgtatttctaaccatacaactgtggaactaagcaag
gaccatgactatattaaagatgtaaatggaactacaagtggtataggcacaggtagcagt
gtggaaaaatacattattgatgagagcgattacatgtcattcataaacaacccaagtctc
acagtgacagtgccaattgctgtgggtgaatccgactttgaaaatctaaacacagaggaa
tttagtagtgaatcagatctggaagaaagcaaagagaagttaaactcatctagttcatca
gaaggcagcacagttgatattggacttcctgcagaagagcaaccagaagctgaacctgag
gaagcccaagagccagaggcctgcttcacagaaggctgtgtacgaaggtttaagtgctgt
caagtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttc
aggattgttgaacacaactggtttgagactttcattgtctttatgattctcctcagtagt
ggagctctggcttttgaagacatatatattgaacaacgtaaaactatcaagaccatgctg
gagtatgctgacaaggtcttcacttacatattcattctggaaatgctgctgaagtgggtg
gcatatggctatcaaacatactttactaatgcctggtgctggctggacttcctaattgtt
gatgtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccatt
aagtcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggc
atgagggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctc
gtttgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaag
ttctactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaat
tttagtcagtgcgaggaactcataaaaaacaatcagagtgcccgatggaaaaacgtgaaa
gtaaactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaa
ggctggatggatattatgtatgcagctattgactcaagagatgtaagtactcaacccaag
tatgaagacaacctctacatgtatttgtattttgtcatctttataatttttgggtctttt
ttcaccctgaacttgttcattggtgtcattattgataacttcaatcagcaaaaaaagaag
tttggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaa
aagctgggatccaaaaaaccacagaaacctatacccagaccagggaacaaattccaaggc
atggtctttgattttgtgacacagcaagtatttgacatcagcatcatgattcttatttgt
cttaacatggttactatgatggtagaaactgatgaccagagtgaagaaatggaaaatatt
ttatactggataaacctggtgtttattgtacttttcactggagaatgtgtcttaaaacta
atttcacttcgccattactatttcactataggctggaacatttttgattttgtagttgtg
attctctcaatagtaggtatgtttttagccgagatgattgaaaagtactttgtgtccccc
acactattcagagtcatccgacttgccagaataggtcgaatcctgcgcctcattaaaggc
gctaagggcatccgcactctgctttttgccttgatgatgtctcttcctgctttgttcaac
attgggctgctgctgttcctggtcatgtttatctatgcgatttttggcatgtccaacttt
gcctacgttaaaagagaagctggtatagatgacatgttcaactttgaaacttttggcaac
agcatgatctgcctgttccaaattaccacatctgctggctgggatggtttgctagcccca
attcttaacagtggggagccagactgtgaccctaacaaagctcatccagggagttctgtg
aagggcgactgcggcaacccttctgttgggattttcttctttgtcagctacattatcata
tcatttctggtagtggtgaacatgtacattgctgtgattttggagaactttggtgttgct
actgaagaaagtgctgagcccttgagtgaggatgactttgagatgttctatgaagtctgg
gagaagtttgatcctgatgcaacacaattcatggaatttgagaaactgtctgattttgca
gcagcacttgagcctcctcttcacctacccaaaccaaacaaagtccagcttattgcaatg
gatctgcccatggtaagcggtgacagaattcactgccttgacatcttgtttgctttcaca
aagcgtgttctgggggaaagtggggagatggatgctctcagaatacagatggaagatcgc
tttatggcatccaatccttcaaaagcttcctatgaaccaattacaaccacattgaaacga
aaacaggaggaagtatctgctgtcattattcaacgggcttatagacgtcatcttctaaaa
cgaacagtaaaacaagcttcctttatctataacaaaaacaaaactgaaggaggagctggt
cagggtatgaaagatgaaatccttattgacaagttaaatgaaaactcatttacagagaaa
actgatataactgcatcaacagcagtttgtccaccttcttatgatcgtgtaacacggcca
gtcaaagaaaagcatgaaaaggaagaaaaagatggtcagaaataa
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integrated database retrieval system
