Dryobates pubescens (Downy woodpecker): 104309278
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Entry
104309278 CDS
T08526
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104309278 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104309278 (SF3B1)
03036 Chromosome and associated proteins [BR:
dpub03036
]
104309278 (SF3B1)
Spliceosome [BR:
dpub03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104309278 (SF3B1)
Complex B
104309278 (SF3B1)
Complex C
U2 SnRNP specific factors
104309278 (SF3B1)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104309278 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
104309278
NCBI-ProteinID:
XP_009908887
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccatgaagatattgaagcacaaattcgagaaattcaaggg
aagaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagagatttatggaggcagtgacagcagatttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttctacgagcttgctcggccagaagaag
ccagggtaccacgctccagtggctttgcttaatgacatcccacaatctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgacccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaggaagagagggaaattagacaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagctgcatctcagccaccttcaaaacgcaaacggcgatgggatcag
acagctgatcagactcctggtgctacacctaaaaagctatccagttgggatcaagcagag
actcctggccatacaccatctctgcgatgggatgaaactccaggccgtgcaaagggcagt
gaaactcctggtgctaccccaggctcaaaaatctgggatccaactcccagtcatacgcca
gcaggagctgccacacccggacgggacacacctggacatgcaacaccaggccacggaggt
gccacttccagtgcacgtaaaaaccgatgggatgaaacacctaaaacagaaagagatact
ccgggccatggcagcgggtgggctgagacacctcgtacagatagaggtggtgactccatc
ggtgagacaccaaccccaggagcaagcaaaaggaagtcacgttgggatgaaacgcctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctacaccaggtcatatcatgagcatgacccctgaacagctg
caggcttggcgctgggaaagggaaatagatgagagaaacagaccactttctgatgaagaa
ttggatgctatgtttccagaaggatataaggttcttcccccaccagctggttacgtacct
attcgcactccagctcgcaagcttacagcgactccaacaccgttgggtggtatgactggg
ttccacatgcagactgaagaccggactatgaagagtgtcaatgaccagccatctggcaac
ctccccttcctaaaaccagatgacattcagtacttcgataaactcctggttgatgtcgat
gaatcaactctcagtcctgaagaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcctatgaggaaggctgcgttgcgacagatcaccgataaagct
cgggaatttggagcagggcctttgtttaatcaaatcctgcctctgctgatgtcaccaaca
cttgaagatcaggagcggcacttgctcgtcaaagtcatcgacagaattctgtacaagctg
gatgacctggtccgaccatacgtgcacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gctggtttggccacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtccgaaacacaacagctcgagcctttgctgtcgttgcctctgctttgggcattccttct
ctgttgcccttcttgaaagctgtttgtaaaagcaaaaaatcctggcaggctcggcatact
ggcatcaagattgtacagcagattgccattctgatgggttgtgccatcttgcctcacctt
aggagcttggttgagattattgaacacggtcttgtggatgaacagcagaaagttcgcacc
atcagtgctttggctattgctgctttggctgaggcagccactccctatgggattgagtca
tttgactctgtcctgaagcctttatggaagggtatccgtcaacacagaggaaagggcttg
gctgcctttttgaaggctattggttacctgattccgctcatggatgctgagtatgcaaac
tactacaccagagaagtcatgttgatccttatcagggagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggcacagatggtgttgaagca
aactacattaaaacagaaatcttgccacctttcttcaaacacttctggcagcacagaatg
gcattggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcggcagaaataatttccagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaaccattgagaagataatgggaaatctgggggcagcagac
attgatcataaactggaagaacagctcattgatggtatcttgtatgccttccaggaacag
accacagaggattcagtgatgctgaatggctttggcacagtggttaacgctctgggcaag
agagtgaagccctacttgccacagatctgtggtacagtgctgtggcggttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctctaggactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtgctgtatgagtacctggga
gaagagtaccctgaagtactgggcagcatactcggagcactgaaggctattgtgaacgtt
ataggtatgcacaagatgacaccacccatcaaagatctgctgccacgccttacccctatt
ttgaagaacaggcatgagaaagtacaggagaattgtattgatcttgtggggcgcattgca
gacagaggtgcagaatatgtttctgccagggaatggatgagaatctgctttgaactgctt
gaattactaaaagcccacaagaaagctatccggagagccacagtgaacacttttgggtac
attgcaaaagctattggacctcacgatgtactggctacattgctcaacaacctgaaagta
caggaaaggcagaacagagtgtgtactacagtagcaattgctattgtagctgagacttgc
tcgcctttcacagtgctgcctgcactcatgaatgagtacagagtgccagaactgaatgtc
cagaacggtgtgttaaaatccctgtctttcctctttgaatacattggagagatgggcaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggaccttgtg
cacagacagacagccagtgcggtggtgcagcatatgtctctgggagtttatgggtttggc
tgtgaagattctcttaaccatctgctaaattatgtgtggcctaatgtgtttgaaacctct
cctcatgtcattcaggcagtcatgggggctctggagggcctcagggtcgctattggtccc
tgcaggatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtaagagat
gtttattggaagatctacaattccatctacatcggctcccaggacgctctgatagcacac
tatccccggatctacaatgacgagaagaacacctatattcgttacgaacttgattacatc
ttataa
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integrated database retrieval system
