Dryobates pubescens (Downy woodpecker): 104309439
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Entry
104309439 CDS
T08526
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04140
Autophagy - animal
dpub04148
Efferocytosis
dpub05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104309439 (VPS18)
04148 Efferocytosis
104309439 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104309439 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpub04131
]
104309439 (VPS18)
Membrane trafficking [BR:
dpub04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104309439 (VPS18)
Hops complex
104309439 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf_RING_Vps8
zf-RING_2
Nup54_57_C
DUF5600
DUF2229
zf-rbx1
DUF1664
KNOX2
Motif
Other DBs
NCBI-GeneID:
104309439
NCBI-ProteinID:
XP_009909067
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MSSRTGAGYVNARLEKETPIFNKQRIDFSPPEKINSLVVSSNQLCMSLGKDTLLRIDLGK
PDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSECLYLNRSVQKVRALSRWKGHLIE
SVGWNKFLGSETNTGPILVGTAQGQIFEAEISVSEGSLFSTNPDQYFRQVYTLEEESGPA
PVCCLEIERGLEGKFFIIATTRKRLFQFVGKIPEGTEQQGFGSIFAVHADHLPSFREFPA
NLGFSEIAFYTPKLRSNPRSFAWMMGNGVLYGTLDYSRPDSILSDERVWVYPSDIDVAVN
KPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFLEKFGLLTRMIKDPTVQQIWIHTE
KVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPECLDIVLAKEAEHCFQNKRYLESA
KCYALTQNYFEEIALKFIEAKQEEALMEFLLKKLSNLKPSEKTQTTLLTTWLTELYLNWL
GILEGDPSQRTLYLDTREKFRTFLGSPRNKECLFNNRASIYELLASHGDTEHMVYFAVIM
QDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSPVLIQHIPKKVVDAWISMGSRLDA
RNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQQAIHNYLLSLYALCRPDSLLSYL
EQAGTNPNRIHYDLKYALRLCAEHGHHRACVHIYKVMELYEEAVDLALQVDVDLAKSCAD
LPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSCALLKIEDVLPFFPDFVTIDHFKE
AICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEMRNKYGSVEPQEKCAACDFPLLNR
PFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQKKLAATSQPSKSHLRPKEADSASL
GKGQQSREQVKADIDDIVAAECVYCGELMIRSIDKPFIDPHKYEEEMQSWL
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacgcacaggggcagggtatgtgaatgcacggctggagaaggaaacaccaata
tttaacaagcaaaggattgatttttctcctcctgagaaaattaacagcttggtggtctcc
tctaaccagctctgtatgagccttgggaaagacacccttctcaggattgaccttgggaag
ccagatgaacctaaccaggtagagctgggacgcaaagatgaagccaaagtctacaagatg
tttttggaccacacaggctctcatctgctgattgctctgaacaccagtgaatgcctctac
ctgaacagaagcgttcagaaggtgcgagcgctctcccgctggaagggccacctgattgaa
agcgtgggctggaacaaattccttggttcagagaccaacactgggcccattctggtgggg
acagcccaggggcagatcttcgaggctgaaatctctgtcagcgagggaagcctcttcagc
actaatcccgaccagtacttccgccaggtctacactctggaggaggagtcaggaccggcc
ccggtctgctgcttggagattgagcgagggctggaagggaaattctttattatagccacc
acccgaaagagactcttccagtttgttggcaaaatacctgaagggacagagcagcaaggc
ttcggctccatctttgccgtgcacgctgaccatctgcccagcttccgggagtttccagcc
aacctgggtttcagtgagatagccttttacaccccaaagctgcgctccaacccgcgctcc
tttgcctggatgatgggcaacggcgtcttgtacggtaccttggactacagccgtcccgac
tccatcctgagcgatgagcgggtctgggtttacccttcggatatcgacgtagccgtcaac
aagcccatctccatcgtgctcacgcagttccacttcctcttgctgctgcccgaccgggtg
aaggctgtgtgcaccctgaacgggcaggtggttttccaggacctcttcctggagaagttt
ggcttgctgacacgcatgatcaaagatcccacggtccagcagatatggatccacacggag
aaggtagtgttccgctaccacgtccagcgggagtctagagacgtgtggaagatgtatatg
aacatgaacaaatttgatttagccaaggagtactgcaaagaccgtccggagtgcctggat
atcgtgctggcaaaggaggcagagcactgcttccagaacaagaggtacctagagagcgcc
aaatgctacgcgctgacccagaactacttcgaggaaattgctctcaagttcattgaagcc
aagcaagaggaggccctgatggagttcctgcttaagaagctaagtaacctaaagccttct
gagaagacacagaccacgttgctgaccacgtggttaacggagctgtacctgaactggctg
ggcatactggagggagatccctcgcagcgaactctctacctggacacacgggagaagttc
cgcaccttcctgggcagccctaggaacaaggagtgtctgtttaacaacagggcatccatc
tacgagctgctggcgagccacggggacactgagcacatggtctactttgcggtcatcatg
caggactacgagcgtgtagtggctcatcattgccagcacgatgagtacgacgaagctcta
aacgtgctgtccaggcacagggacgagaagctcttctacaagttctctccagtccttatc
cagcatattcccaagaaggtagttgatgcttggatttctatgggctctagactggatgcc
aggaacctcattccagcccttgtcaactatagccagagtgccagcacgcagcagatcaac
gaagccattaggtatatggagttctgtgtctatcagctggaggaaacccagcaagccatt
cacaactacctgttgtctctttacgccctgtgccggccggactcgctgctctcctacctg
gagcaggcaggaaccaacccaaaccgcatccactatgacctgaagtacgccttgcggctg
tgcgcggagcacggccaccaccgtgcctgcgtccacatctacaaggtgatggagctgtac
gaggaggccgtggatcttgccttgcaggtggatgttgatcttgcaaagtcctgtgcagat
ctgcctgaagatgatgaggagctgcggaagaagctgtggttgaagattgctcgccacgtt
gtccaggaggagaaggacgtgaagaaggccatggcctgcctctccagctgtgccctgctg
aagatcgaagacgtcctgcccttctttccagactttgtcactattgaccatttcaaggag
gcaatctgcaactccctggaggactacaacaaacacatcgaggagctgaaaagggagatg
gaggaagccacgcagagcgccaagagaatccgagaggacatccaggagatgaggaacaag
tatggctccgtggagcctcaggagaaatgtgccgcttgtgacttccccctcctcaaccgc
cccttttaccttttcctctgtggtcacatgtttcactatgactgcctcctccaggctgtt
ttcccaaacctccctgcctataagcaggcaaaacttgaagatcttcagaagaagctggca
gctaccagtcagccttccaagagccaccttcgtcccaaggaggcagacagcgccagcctg
gggaaggggcagcagagccgggagcaggtgaaggccgacatcgacgacatcgtggcagcc
gagtgcgtgtactgcggcgagctgatgatccgctccatcgacaaacctttcattgaccct
cacaaatacgaagaggagatgcagagctggctgtaa
DBGET
integrated database retrieval system
