Dryobates pubescens (Downy woodpecker): 104309822
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Entry
104309822 CDS
T08526
Symbol
ERCC3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03022
Basal transcription factors
dpub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104309822 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
104309822 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104309822 (ERCC3)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104309822 (ERCC3)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104309822 (ERCC3)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104309822 (ERCC3)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104309822 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
104309822
NCBI-ProteinID:
XP_009909488
LinkDB
All DBs
Position
Unknown
AA seq
869 aa
AA seq
DB search
MVFSHGNAPLFRPAPLPHGTRLSAAARAALLCPSARETLRRGRSPLPAPVPGAPAIACLR
SSRAAEVTRGREVSLGHRGPGRRLCHFITAPALLPDKKKSKKRHYDDDEDDEDEAPGRES
QEAVPSAAGKQVEDSSTKVDEYGAKDYRQQMPLKADHSSRPLWVAPDGHIFLEAFSPVYK
YAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGVPDGIIQ
FIKLCTVSYGKVKLVLKHNRYFVESTHPDVIQQLLQDHVIKDCRLRNAEGEETELITETF
TSKSAISKSSEGSFGPSTSQATDAQNKPDVPADLFEFYEQMDKDEEEEEETQTVSFEVKQ
EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRV
LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPM
SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
LGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
GMEEEELAFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSAQVSRRTGTMSSMSGAD
DTVYMEYHSARSKAAANKHIHPLFKRFRK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcagtcatggcaacgctcctctgtttcggcccgctccccttccccacggtaca
cggctgtccgccgcagccagggcggcgctcctctgcccgtccgcgcgagaaaccctgcgg
cgagggcgctccccgctcccggccccagtgccaggcgctccagccattgcgtgcctccgc
tcctcccgcgcggcggaagtgacgcggggcagggaggtctctctggggcaccgaggtcct
gggcggcggctgtgccacttcatcacagctccagctttgctcccagataagaaaaagtcc
aagaagcgccattatgatgacgacgaagacgatgaagacgaagctcccggcagggaatcg
caagaggctgtgccttctgccgcggggaaacaggtggaggacagcagcaccaaagtggac
gagtacggggcgaaggactacaggcagcagatgcccctgaaagctgaccactcctcgcgt
cccctctgggtggctcctgatggccatatttttctagaagccttttctccagtttacaaa
tatgcacaggactttttggttgccattgctgagcctgtatgcagaccaacccacattcac
gagtacaagctgactgcttactcactgtatgctgccgttagcgttggtttacaaacgagt
gacatcacagagtatttacaaaaactgagcaagactggtgtcccagatggaataattcag
tttatcaagctttgtactgtcagctatgggaaggtgaagctggtactgaaacataacagg
tattttgtggaaagtacccaccctgatgtcattcagcagcttctgcaagaccatgtgata
aaagactgtcgcctgagaaatgctgagggtgaagaaacagagctcatcacagagacattc
acgagtaaatcagcgatttccaaatccagcgaaggtagctttggtccatcgacatcacaa
gcaacagatgctcagaataagccagatgtcccagctgatttatttgagttttacgaacag
atggacaaagatgaggaggaagaggaagaaacacagactgtgtcttttgaagtcaagcaa
gagatgattgaagaacttcagaagcgttgtatccatttggaataccccttgctggcagaa
tatgatttcagaaacgattctgtgaatcctgatattaacatagatctgaaacctacagct
gtcctccggccctatcaagagaaaagcttgaggaagatgtttggaaatgggcgagccaga
tctggtgttattgtcttgccatgtggtgctggcaagtctctggtcggagtgacagctgca
tgcactgtccgcaagcggtgtctggtccttggtaattctgcagtgtctgtagagcaatgg
aaagcccagttcaagatgtggtccaccattgacgacagtcagatatgtcggttcacttct
gacgccaaagacaagcccattggctgttctgttgctatcagcacttattccatgttggga
cacacaacaaaaaggtcctgggaagcagaaagagtaatggagtggcttaaaagtcaagag
tggggccttatgatacttgatgaagtacatactatccctgcaaaaatgttcagacgtgtg
ctcactattgtgcaagctcattgtaaactggggctgactgctaccctggtcagagaagac
gataaaattgttgacctgaacttcctgattggaccaaaactctatgaagccaactggatg
gaactgcagaacagtggctacattgctaaagtccagtgtgctgaggtttggtgcccaatg
tcacctgaattttacagagaatatgtagccatcaaaaccaagaaacggattctgctgtac
accatgaacccaaacaaattcagggcctgccagttcctcattaagtttcacgaacgacgg
aacgataaaatcatcgtgtttgctgacaacgtgtttgcactgaaggagtatgcaatcaga
cttgggaaaccctatatctatggccccactgcacaaggagaaagaatgcaaattctgcaa
aacttcaagcacaatccaaaaatcaacactattttcatttccaaggtaggtgacacatcc
ttcgatctgccagaagccaatgttctgattcagatttcctcccatggtgggtctcgaaga
caggaggctcaaagactgggtcgagtgctgagagccaaaaaaggcatggttgcagaagaa
tacaatgcctttttttattctctggtgtcccaagacactcaggaaatggcatattcaacc
aagcgacaacggtttcttgtagatcaaggttatagcttcaaggtaataacaaagcttgca
ggcatggaagaagaagaacttgcattttcatcaaaagaagaacagcagcagcttctccag
aaagtcctacaagcatctgacctggatgctgaggaggaagtagttgctggagaatatggt
tctaaatcagctcaggtgtcacgtcgcacgggcacaatgagctccatgtcgggagcagat
gacacagtttacatggagtaccactctgcgcgcagcaaggcagcggccaataaacacatc
caccccctgttcaaacgcttccggaagtga
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