Dryobates pubescens (Downy woodpecker): 104309838 Help Entry 104309838         CDS       T08526                                  Symbol COL3A1 Name (RefSeq) collagen alpha-1(III) chain   KO K19720   collagen type III alpha Organism dpub  Dryobates pubescens (Downy woodpecker) Pathway dpub04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:dpub00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     104309838 (COL3A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:dpub00536]     104309838 (COL3A1) Glycosaminoglycan binding proteins [BR:dpub00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104309838 (COL3A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  104309838 NCBI-ProteinID:  XP_009909504 LinkDB All DBs Position Unknown AA seq 1463 aa AA seqDB search MMSFVQKVTLLILAVFQPSVILAQQDALAGCTHLGQIYADRDVWKPEPCQICVCDSGSVL CDDIICDDQELDCPNPEIPFGECCPVCPQTTPQPTRVSSPDPLVRGPKGDPGSPGIPGRN GLPGPPGQPGSPGAPGPPGICQSCPSINGGSFSPQYDSYDVKAGSAGIGYQQPISGFPGP PGPSGPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPIGMIGPVGPPGKDGEPGRPGR NGDRGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGARGESGAPGPKGETGLPGANGSPGQ PGPRGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGP AGSSGSPGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGPPGP AGASGNPGAKGSPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGV PGTPGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGNPGLPGMRGL PGVPGSPGGDGKPGPPGNQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGP GGPPGTPGPAGKNGDVGLPGPPGPTGASGERGEPGPAGPPGLQGLPGGPGPAGENGKPGE QGPKGEIGGPGFPGPKGENGIPGERGAPGPPGPPGTRGGPGPAGSEGAKGPPGPPGAPGG TGLPGLQGMPGERGASGSPGPKGDKGEPGGKGADGIPGARGERGNVGPIGPPGPAGPPGD KGETGPAGAPGPTGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGP PGAAGPQGGPGAPGPPGPQGIKGERGSPGGPGAAGFPGARGLPGPPGSNGSPGPPGNAGP AGKDGPPGPPGSAGSPGGPGPAGIRGEPGAPGEKGPPGARGERGAPGEPGPQGIVGGRGN TGLPGLRGPSGPPGMAGAKGEDGKPGTNGIPGERGAPGPQGPIGQRGLPGEPGRDGNPGS DGLPGRDGSPGGKGDRGENGSPGPPGPPGHPGPAGTSGAPGKAGERGFQGPPGPPGSSGP AGARGPAGPQGPRGDKGEPGERGSTGIKGHRGFPGTPGLPGPPGPLGPQGTIGSPGASGA RGPPGPSGPPGKDGRSGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPAGPPGPCCGGGA AALGAGEKGPVGYGYEYRDEPKENDISLNEIVSSMKSINNQIENIISPDGSRKNPARNCR DLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLNATPSTVPRKNWWTSESSGK KHVWFGESMNGGFQFSYGDAELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDEAS GNVKKALKLMSSTESEIKAEGNSKFTYAVLEDGCSRHTGAWGKTVFEYRTRKTMRLPVVD IAPLDIGGPDQEFGVDIGPVCFL NT seq 4392 nt NT seq  +upstreamnt  +downstreamnt atgatgagctttgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt attttggcacaacaggacgctctcgcaggatgtacccatcttgggcagatctatgctgac agagacgtttggaaaccagagccatgccaaatctgtgtgtgcgactcgggatcggttctc tgcgatgacatcatctgtgacgaccaggagctggactgccccaacccagagattcccttt ggagagtgctgtccagtttgtccacaaacaacaccacaacctacaagagtaagtagtcct gacccacttgtccgaggccccaaaggagaccctggttctcctgggattccaggcagaaac ggcctccctggacctccaggacagccagggagtcctggagctcctggcccccctgggatc tgccagtcgtgtcccagtataaacggaggtagcttttctccccagtatgactcctatgac gtgaaggctggctcagctggtatcggttaccaacagcccattagtggcttcccaggaccc cctggccccagtggcccccctggcccacctggtcatgcaggtccacctggctctgcagga tatcaaggttcccctggagaaccaggacagcctggccctcctggacctccaggccctatc ggaatgataggcccagttggcccaccaggaaaagatggagaaccaggaagaccaggcaga aatggagaccgtggaatccctggattaccgggtcacaagggacaccctgggatgcctggg atgcctgggatgaaaggccaacgaggttttgatggaaaagatggtgccagaggtgaaagt ggtgctcctggtccaaagggtgaaactggtcttcctggagcaaatggatcaccaggccaa ccgggacccagaggtccagcaggtgaaaggggaagacctgggaatcctggtggccctggt gcccatggcaaagatggatctccaggagcagcaggcccacctggtcccccaggcccccct ggaactgcaggatttccaggctctccaggttttaagggtgaagctggtcctcctggtcct gctggttctagtggtagtccaggagagagaggagaacctggtcctcagggtcaggctggg ccacctgggcctcagggccctcctggaagagctggaagccctggcaacaagggtgaaatg ggaccttcaggtattcctggtgctcctggtctgccaggtggccgcggtcctcctggtcct gcaggtgcaagtggaaatcctggggcgaaaggctctccgggagagcctggtaagaatggt gcaaaaggagatccaggcccaaaaggcgagcgtggtgaaaatggcaccccaggtgctcct ggacctcctggtgaagaaggcaaaaggggtgcaaatggcgaacccggccagaacggcgta cctggtacacctggagaaaggggttcccctggtttccgtggcttacctggtagcaatgga cttccaggtgaaaagggccctgcaggcgagcgtggtagcccaggtcctcccggccccagc ggacctgcgggagagcgtggacaagatggaaacccaggtcttcccggaatgagaggtttg cccggagttccagggagccctgggggtgacgggaagccaggacctccaggtaaccagggt gaatctggccgctctggtccacctggccctccaggtccacggggtcagccaggtgtgatg ggtttccctggtcctaaaggcaatgagggtgcaccaggtaaaaatggagaaagaggcccc ggaggaccacctggaacacctgggcctgctgggaagaatggtgatgttggcctccctggt cctcctggacctactggtgcttctggggaaagaggagaaccaggaccagcaggtccacct ggcctccagggattgcctggtggaccaggaccagctggagagaatggaaagcctggagaa cagggacccaaaggtgaaattggaggccccgggttcccaggccctaagggtgaaaatggt atcccaggtgaacgaggtgcacctggccccccaggacctcctggaacacgaggtgggcca ggtcctgctggctcagagggtgccaagggtcctcccggacctcctggtgcccctggaggc acagggctgcctggcttacagggaatgcctggagaaagaggagcttctggaagtcctgga ccaaaaggagataagggagaacctggtggcaaaggtgctgatggaattcctggtgcaaga ggagagagaggtaacgtaggccccatcggtcctcccggccctgctggcccacctggagac aagggagagactggcccagcaggtgccccaggtccaacgggctcccgtggtggtcctggt gaacgaggagaacaaggtcttcctggacctgctggcttccctggagctccaggccaaaat ggagaacctggtgggaaaggagaaagaggcccccccggtctaagaggagaggctggaccc cctggagctgcaggtccacaaggtggtcctggtgcaccaggtccacctggtccccaagga ataaaaggagaacgtggatctcctggaggccctggtgctgctggtttccctggtgctcgt ggtctgcccggtccccctggtagcaatggcagtccaggcccccctggtaatgcagggcct gcaggcaaggatgggcctcctggaccccctggtagtgctggttctcctggtggtccagga cctgctggaataagaggtgaacccggcgcaccaggagagaaagggccaccaggtgcacga ggagaaaggggtgcaccaggggaaccaggtcctcaaggcatcgtcggaggccggggtaac acgggtttgccagggctgcgtggccccagtggtccacctggtatggcaggtgccaagggt gaagatggtaaaccaggcaccaatggtatcccaggagaacgtggtgctcctggtccacaa gggcctattggacaacgaggcttacctggagaacctggcagagatggtaaccctggctca gatggcttgcctggacgtgatggatccccaggaggcaaaggtgaccgtggggaaaatggc tctcctggccctcccggacctcctggtcaccctgggcctgcaggtaccagtggtgctcct ggaaaagctggggaaagaggatttcagggtccacctggcccccctggctctagcggtcct gctggtgctcgtggtcctgctggtcctcaaggtcctcgtggtgataaaggtgaacctggt gaacgaggcagcaccggcataaagggccatagaggatttcctggtacacctggtctccct gggcctcctggtcccctgggtccacaaggaacaattggaagtccaggagcttctggtgca cggggccccccaggaccatctgggccacctggaaaagatggtagaagtggctatccaggt ccaattggtcctcctggtccccgtggtaacagaggtgaaagcggccctgccggtccccca ggccagcctggtcttccaggtcccgctggccctcctggtccctgctgcggtggtggcgca gctgccctgggtgcaggtgaaaaaggtccagtgggctatgggtacgaatacagagatgag ccaaaggagaatgacatcagcctgaacgagatcgtgtcttccatgaaatcaatcaacaac cagatcgaaaacatcatcagccctgatgggtcgcggaagaacccggctcggaactgcagg gacctcaagttctgccatcccgagctcaagagcggagagtactggattgaccctaaccaa ggctgcaagatggatgctatcaaagtctactgtaacatggaaactggggagacatgcctc aatgctacccccagcactgtgccaaggaaaaactggtggaccagtgaaagcagtgggaag aaacacgtttggtttggagaatctatgaatggaggcttccagttcagctacggcgatgct gagctgccagaggacgtctcagaggtgcagttggccttcctgcgcatcctctccagccga gcctcccagaacatcacctaccactgcaagaacagcattgcctacatggatgaggccagt gggaatgttaaaaaggctctgaaactgatgagctctacggaaagtgagatcaaggctgaa ggaaacagcaaattcacctatgctgttctggaagatggctgctctagacacactggcgca tggggtaagacagtctttgagtaccggacacgcaagaccatgaggctgcccgtggtcgac attgcacctttagatatcggcggtcccgatcaggaattcggcgtggacattggcccagtc tgcttcttgtaa

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