Devosia polycyclovorans: ACE4RL_08605
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Entry
ACE4RL_08605 CDS
T11232
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dpv Devosia polycyclovorans
Pathway
dpv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dpv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACE4RL_08605 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpv03021
]
ACE4RL_08605 (rpoD)
Transcription machinery [BR:
dpv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACE4RL_08605 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4168
Motif
Other DBs
NCBI-ProteinID:
XHD29169
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Position
1707366..1709414
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AA seq
682 aa
AA seq
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MATKAANKASKETEKPESGAAETSNDSPLIDQNDAAVKKLIKVAKKRGYVTYEELNAVLP
SDEVSSEQIEDFMSMFSEMGINVVDEDEVEETEVEKDEEDSGTEVATSTGTAVANTSNAK
SGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWR
EQLGQGEILLRDIIDLEATYAGPDAKQAAPEVQVAPKPEPEPVKEKQKAAPKRASGDDDE
YVPEEPEAPQDPQDDDDDEFDNALSLSAMEAELKPQVVETFDRIAAAYGEMREMQDRHAE
DRTATVSDAENSRLSALRAEVIADVKSLSLNNGRIESLVEQLYDINKRLVRLEGRLLRLA
ESYGVKRESFLENYYGRELDPSWEWSLENFEGKGWAEFARRETDTIADIRNEIATLATEA
GLDIGEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQML
HEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQDANAVQP
IDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIE
AKALRKLKHPSRSRKLRSFLDN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcagcgaacaaagcctcgaaggaaaccgaaaagccggaaagcggcgcc
gcggaaacttcaaacgactctcctttgatcgatcagaacgatgcggccgtcaaaaagctc
atcaaggtcgccaagaagcgtggctatgtcacctatgaagagctgaatgccgtgctgccc
tccgacgaggtcagctcggaacagatcgaagacttcatgtcgatgttctcggagatgggc
atcaacgtggtcgacgaagacgaggtcgaagagacagaagtcgaaaaggacgaggaagac
agcggcaccgaagtcgccacctcgaccggcacggccgtcgccaacacatccaacgccaag
tccggttcggaccgcaccgatgacccagtgcgcatgtatctgcgcgagatgggttcggtg
gaactgctcagtcgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggccgcgaa
accatgatcgaggggctttgcgaaagcccgctgactttccaggctatcattatctggcgc
gagcagctcggacagggcgaaatcctgctgcgcgacattatcgacctggaagccacctat
gccggccccgacgccaagcaagcggcgcccgaggttcaggtggcgcccaaaccagagccc
gagccggtcaaggagaagcagaaggccgcgcccaagcgcgcttcgggtgacgatgacgag
tatgtgcctgaggagcccgaggcgccgcaggacccacaggacgatgacgacgacgagttc
gacaacgccctgtcgctttcggccatggaagcagagctgaagccgcaagtggtggagacc
tttgaccgcattgctgccgcctatggcgagatgcgcgagatgcaggaccgccacgccgaa
gaccgcaccgccacggtgtcggacgccgaaaacagccgtctcagcgccctgcgcgctgaa
gtgattgccgacgtgaagtccctctcgctcaataatggccgtatcgaaagcctggtcgag
cagctctacgacatcaacaagcgcctggtgcgtttggaaggccggttgctgcgcctggcc
gaaagctatggcgtcaagcgcgaatccttccttgagaattactacgggcgcgagctggat
ccgagctgggaatggtcgctggagaacttcgaaggcaagggttgggctgaattcgcccgc
cgcgagactgacaccattgccgatattcgcaatgagattgcgacgctggccaccgaagcc
gggctcgatatcggcgagtatcgccgcattgtgcataaggtgcagaagggtgaacgcgaa
gcggccatcgccaagaaggagatggtggaagccaatcttcgcctggtgatctcgattgcc
aagaagtacaccaaccgcggcctgcagttcctggacctgatccaggagggcaatatcggc
ctgatgaaggccgtggacaagttcgaatatcgccgcggctacaagttctcaacctatgcg
acctggtggattcgccaggcaatcacccgctctatcgccgatcaggcgcgcaccatccgt
attccggtgcacatgatcgagacgatcaacaagatcgtccgcaccagtcgccagatgctg
catgaaatcggtcgcgagccgacgccggaagagctcagcgaaaagctgcagatgccgctc
gacaaggtgcgcaaggtcctcaagatcgccaaggagccgatctcgcttgaaacgccgatc
ggcgacgaggaagattccaacctcggggatttcatccaggacgccaatgcggtgcaaccg
atcgatgcggccatccagtcgaacctgcgcgaaaccacgacccgcgttctggcctcactc
acgccgcgcgaagaacgcgtgctgcgtatgcgtttcggcatcggcatgaacaccgaccat
acgcttgaggaagtgggtcagcagttctcggtgacccgcgaacgcatccgccagatcgaa
gccaaggcgctgcgcaagctcaagcacccgagccggtcgcgcaagctgcggagcttcctc
gataattag
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