KEGG   Devosia polycyclovorans: ACE4RL_11080
Entry
ACE4RL_11080      CDS       T11232                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dpv  Devosia polycyclovorans
Pathway
dpv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dpv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ACE4RL_11080 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpv03021]
    ACE4RL_11080 (rpoC)
   03400 DNA repair and recombination proteins [BR:dpv03400]
    ACE4RL_11080 (rpoC)
Enzymes [BR:dpv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ACE4RL_11080 (rpoC)
Transcription machinery [BR:dpv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ACE4RL_11080 (rpoC)
DNA repair and recombination proteins [BR:dpv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ACE4RL_11080 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 BSH_RND RnfC_N Apocytochr_F_C ApbA_C
Other DBs
NCBI-ProteinID: XHD26191
LinkDB
Position
2215809..2219993
AA seq 1394 aa
MNQHSHVMDPFNPAVPVQTFDQMKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLF
CARIFGPVKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFL
KSLPSRIALLLDMTLKDIERILYFENYVVLDPGLTPFTQNELLTEEQYLDAQDEYGADSF
TAKIGAEAIREILLGLDLEKIAADLRVEIAEATTELKPKKLAKRLKIVEQFIVSGNKPEW
MIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIT
VGPNLKLHQCGLPKKMALELFKPFIYSRLEAKGFSSTVKQAKKLVEKEKPEVWDILDEVI
REHPVLLNRAPTLHRLGIQAFEPMLIEGKAIRLHPLVCSAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMNDNEPGEGMAFGSYAELEHA
IDNKVVTLHTKIKARVPAWDADGKQITEIVETTPGRMLIGQILPINPAVPFSTANQLMTK
KMISKMIDTVYRGCGQKETVIFCDRVMQLGFKNACDAGISFGKDDMVIPASKYTIVEDTR
KQVEEFEQQYNDGLITQGEKYNKVVDAWAKCGDKVAEEMMDAIRTVQIDEETKRQKPINS
VYMMSHSGARGSPAQMKQLAGMRGLMAKPDGSIIETPITANFKEGLNVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVAQDAIIVSEDCGTERGLTMEPIVDAGQVVASLGQRILG
RTTADDVFHPISGDLIAPKGTLLEEKHVDVIEEARIQSVRIRSPLTCDMRQGCCAACYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFLEAGAEGKIAVRN
PNLATVEGGKQVVMARNVSLAIVDADGKERATHKVTYGSKLLIKEGDSVRRGQRLAEWDP
YTRPILAEVEGEVVFEDLVDGASVAENTDEATGFTKRVVIDWRGNQRGEGLKPALAIGRG
GSIAKVERGGDARYLLSVDAVIAVEPGEKVAPGDVLARIPLESAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPTEDGADPVEYLIPKGKPFHLQEGDTI
EKGEYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EIVEPGESGLLKDEQLDKLDFDELNDALIAEGKKPATANPVLLGITKASLQTRSFISAAS
FQETTRVLTEAAVSGKADLLEGLKENVIVGRLIPAGTGAGQSKAKQIAAKRDDLILEERR
RQAETVQIAAPAAE
NT seq 4185 nt   +upstreamnt  +downstreamnt
atgaaccagcattcccacgtcatggacccgttcaacccggccgtccccgtgcagactttc
gatcagatgaagatctcgatcgcgagccccgagaaaatcctgtcttggtcgtatggcgag
atcaaaaagccagagacgatcaactatcgtacgttcaagcctgagcgcgatggcctgttc
tgcgcacgcatttttggccccgtgaaggactatgaatgcttgtgcggcaagtacaagcgc
atgaagttcaagggcgtcatctgcgaaaaatgcggtgttgaagtcaccctgagccgcgtt
cgtcgcgagcgcatgggtcacattgaactggctgcgcccgttgctcatatctggttcctc
aagtctttgccgagccgcattgcgctgctgctcgacatgaccttgaaggatattgagcgc
atcctttacttcgagaactatgttgttcttgatcctggtctgaccccgttcacgcagaat
gaactgctcaccgaagagcagtatctggacgcccaggacgagtacggtgccgacagcttc
accgccaagatcggcgccgaagccatccgcgaaatcctgctcggtctcgatctcgaaaaa
atcgctgccgatctgcgcgtggaaattgctgaggctactactgagcttaagcccaagaag
ctcgccaagcgcttgaagatcgtcgagcagttcatcgtttctggcaacaagcccgaatgg
atgatcatgaccgtcataccggtcattccgcctgagctgcgcccgctggtgccgctggat
ggtggccgctttgcgacttcggacctgaacgatctctatcgtcgcgtgatcaaccgcaac
aatcgcctgaagcgcctgatcgagctgcgtgctccggatatcatcatccgcaacgaaaag
cgcatgctgcaggaagctgttgacgcgctgttcgacaacggtcgccgtggccgcaccatc
accggtgccaacaagcgtccgctgaagtcgctttccgacatgctcaagggcaagcaaggc
cggttccgccagaacctgctgggcaagcgcgtggactattcgggccgctcggtcatcacc
gtgggtccgaacctcaagctccatcagtgcggtcttcccaagaagatggcgctcgagctg
ttcaagccgttcatctattcgcgcctggaagccaagggcttctcgtcgaccgtgaagcag
gccaaaaagctggttgagaaggaaaagccggaagtctgggatatcctggatgaggtgatc
cgtgagcaccccgtgctgctcaaccgcgccccgacgctgcaccgtctcggcattcaggct
ttcgagcccatgctgatcgaaggcaaggcgatccgtctgcacccgctcgtctgctcggcc
ttcaacgccgacttcgacggcgaccagatggctgtgcacgttccgctgtcgctcgaagcg
cagctggaagcacgcgtcctgatgatgtcgaccaacaacatcctgcaccccgccaatggt
cagccgatcattgtgccctcgcaggacattgtgctgggtctctattatctgtcgctgatg
aacgacaatgagcccggcgagggcatggcttttggttcctatgcggaactggagcatgcc
atcgacaacaaggtcgttaccctccacaccaagatcaaggcacgcgttccggcttgggat
gcggatggcaagcagatcaccgagattgtggaaacgaccccgggccgtatgctgatcggc
cagatcctgccgatcaacccggcagtgccgttctcgacggccaaccagctgatgaccaag
aagatgatctccaagatgatcgacaccgtgtatcgcggttgcggtcagaaggagacggtc
attttctgtgaccgtgtcatgcagcttggcttcaagaacgcttgtgacgctggcatttcg
ttcggtaaggacgacatggttattccggcgtccaagtacacgatcgtggaagacacgcgg
aagcaggtcgaagagttcgagcagcagtacaatgacggcctgatcactcagggcgaaaag
tacaacaaggtcgtggacgcctgggccaagtgtggcgacaaggttgccgaagagatgatg
gacgccattcgtaccgtccagatcgacgaggaaaccaagcgccagaagccgatcaactcg
gtttacatgatgagccactcgggtgcccgtggttcgccggcccagatgaagcagcttgcc
ggcatgcgcggcctgatggccaagccggacggttcgatcatcgagacgccgattactgcg
aacttcaaggaaggcctgaacgtgctggagtacttcaactccactcacggtgctcgtaag
ggtctggctgataccgcgctgaagactgcgaactcgggctatctgacccgtcgtctggtg
gacgtggcgcaggacgcgatcatcgtgtccgaagactgcggcaccgagcgtggcctgacc
atggagccgatcgtggacgccggtcaggttgtggcctctctgggtcagcgcatcctgggt
cgcacgacggccgacgatgtgttccacccgatttcgggcgatctgatcgcgccgaagggc
actctgctcgaagagaagcatgtcgacgtgatcgaagaggcccgcatccagtcggtccgt
attcgctcgccgctaacctgtgacatgcgtcagggctgctgcgcggcctgctatggtcgt
gaccttgcacgcggtactccggtcaatatcggtgaagctgtcggcgttatcgctgcgcag
tcgatcggtgaacccggtacccagctcaccatgcgtaccttccacattggtggtaccgca
caggtggtggactcgtccttcctcgaggctggtgccgagggcaagatcgcagtgcgcaat
ccgaacctggcaaccgtcgaaggtggcaagcaggtcgtgatggcccgtaacgtgtcgctg
gcgatcgttgacgctgacggcaaggaacgcgctactcacaaggtgacctacggctccaag
ctgctgatcaaggaaggcgacagcgtccgccgcggtcagcgtctggccgaatgggatccg
tacacccgtccgatcctcgccgaagtcgagggcgaagtggtgttcgaggacctggtggac
ggcgcttcggtggcagaaaacaccgacgaggcaaccggcttcaccaagcgcgtggtcatc
gactggcgcggcaatcagcgtggtgaaggcctcaagcctgccctcgcgatcggtcgcggc
ggttcgattgccaaggtcgagcgtggtggcgatgcccgctacctgctctcggtcgatgcg
gtcatcgccgtcgagccgggcgagaaggttgcaccgggtgacgtcctcgcgcgtattccg
ctcgaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgtggccgagctgttc
gaagcccgtcgtccgaaggatcacgccattatcgccgagatcgatggtaccatccgcttc
ggtcgcgactacaagaacaagcgtcgcgtcatcatcgagccgaccgaggacggtgctgat
ccggtcgaatacctgatcccgaagggcaagccgttccatctgcaggaaggcgacaccatc
gagaagggcgaatacatcctggacggcaatccggctccgcatgacatccttgccatcaag
ggcgtcgaggaactggcgcgctatctcgtcaatgagatccaggaggtctatcgcctgcag
ggcgtgctgattaacgacaagcacatcgaggtgattgttcgccagatgctgcagaaggtc
gaaatcgtggaacccggcgaatccggtctgctcaaagacgagcagctcgacaagctggac
ttcgacgagctcaacgatgcgctgattgccgaaggcaagaagccggcaacggcgaacccc
gtgctgctgggcatcaccaaggcctcgctgcagacgcgttcgttcatctcggccgcttcg
ttccaggaaaccacgcgcgtcctcaccgaggccgcagtttccggcaaggccgacctgctc
gagggactcaaggagaacgtcatcgtcggccgcctgattccggccggtactggtgccggt
cagtccaaggccaagcagattgctgccaagcgtgacgacctcattcttgaggaacgccgt
cgtcaggcagagactgtgcagatcgcggcacccgctgccgagtaa

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