Devosia polycyclovorans: ACE4RL_11790
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Entry
ACE4RL_11790 CDS
T11232
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dpv Devosia polycyclovorans
Pathway
dpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACE4RL_11790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpv03019
]
ACE4RL_11790
03009 Ribosome biogenesis [BR:
dpv03009
]
ACE4RL_11790
Enzymes [BR:
dpv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACE4RL_11790
Messenger RNA biogenesis [BR:
dpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACE4RL_11790
Ribosome biogenesis [BR:
dpv03009
]
Prokaryotic type
rRNA processing factors
ACE4RL_11790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
NTPase_1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XHD26327
LinkDB
All DBs
Position
complement(2342526..2345162)
Genome browser
AA seq
878 aa
AA seq
DB search
MATKRMLVDAIHPEETRIVVTAGNRLEEFDFESATRRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLRDEEHEDDHHDDTDEAVSLPEGVTEPDAE
ADPQEPGDADHIEQTPANSEPVESIGGGDALEEVPERRRSTQQRRHQYKIQEVIKRRQVM
LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITADLE
VPQGMGVILRTAGASRTKAEVKRDFEYLMRLWESVRTLTLESQAPCLVYEEGSLIKRTIR
DLYNKDIDEVLVAGDNAYREAKDFMKMIMPSHAKNVKPYGEEQPLFSKYNVENQLDQMFS
PTVTLPSGGYIVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEAAEEVARQLRLRDLA
GLIVIDFIDMMENRSNRAVERKLKDCLKDDRARIQVGRISHFGLMEMSRQRIRFGVVESS
THKCPVCEGTGLVRSTESLALMIMRHIEDHVLRKQGQSVNVRVPVEVALYILNYKRETLS
QLEMRNNLSITITADGKMTGHQFAIEKGETRVSAYADHRAAAHVRVDSAVIEDVTEEDEV
EETEEVEARAPDSEGEGSGRRRRRRRRRGGRNGDQQGQQSAEGAADQDEEADNGGDDDQA
DGEQDAARQAVEGDADGDTRRRRRRGRRGGRRNRREQNGDATPETAEAAVSAPEDAVIDH
VEVNAEPAADAPAATEEKPAGKPRRTRRKKVTETEESAPAETTPVEAISEDSPAEADAEE
KPAEKPKRKPRARKPKTEAIEAAAEPAIAETAPTTAAEPVAEEKPTRTRRAKKELPPEGV
VVTSSAAPDAEASAPAEGEPEPEKKKKVGWWQRRLGLG
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaaagaatgctggtggatgccatccacccggaagaaacacggattgtcgtt
accgccggtaaccggctcgaggagttcgatttcgaatcagcgacccgccgccagttgcgg
ggaaatatctacctcgcgaaggtaacgcgggttgagcccagcctgcaggcggcctttgtg
gaatatggcggcaaccgccacggtttcctcgctttctcggaaattcaccccgactattat
cagattcccgtggccgatcgcgaagccctgctgcgcgacgaggagcacgaggacgatcac
cacgacgacaccgacgaagctgtttcgctccccgagggtgtgactgaaccggacgctgag
gcagaccctcaggaacccggcgatgccgatcacatcgagcagacccccgcaaacagcgag
cctgttgaatcaatcggcggcggcgacgcgcttgaggaagttcccgaacgtcgccgctcc
acccagcagcgccgccaccagtacaagatccaggaggtcatcaagcgccgccaggtcatg
ctggtgcaggtcgtcaaggaagaacgtggcaacaagggtgcagccctgacgacctacttg
tcgctggccggccgctattcggtgctgatgcccaacaccgcccgtggcggcggcatctcg
cgcaagatcaccaatgcggcagatcgcaagcgtttgaaggaaatcactgccgatctcgaa
gtgccccagggcatgggcgtaattctgcgcactgccggtgcctcgcgcaccaaggccgag
gtcaagcgcgacttcgagtatctgatgcgcctctgggaaagcgtccgcacgctgacgctg
gaaagccaggcaccatgtcttgtctatgaggaaggttcgctgatcaagcggaccatccgc
gacctctacaacaaggacatcgatgaagttctcgtggctggcgacaacgcttatcgcgag
gccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagccgtatggc
gaagagcagccgctgttctccaagtacaacgtcgaaaaccaactcgaccagatgttctcg
cccacggtcacccttccttcgggcggctatatcgtcatcaacccgaccgaggcacttgtc
tcgatcgacgtgaactcgggccgctccaccaaggagcacaatatcgaggacaccgcgctc
cagaccaatctggaggcagccgaggaagtcgctcgccagctccggctgcgcgatctcgca
ggcctcatcgtcatcgacttcatcgacatgatggagaaccgctccaaccgggcagtggag
cgcaagctcaaggattgtctgaaggacgaccgcgcccgtatccaggtgggccgcatctcg
catttcggcctcatggaaatgagccgtcagcgcatccgttttggcgtggtggagagctcc
acccacaaatgccccgtctgcgaaggcacgggtctagttcgctccaccgagagcctggcg
ctgatgatcatgcggcatatcgaggatcacgtcctgcgcaagcaaggccagtccgtcaat
gtccgcgtgccggtggaagttgcgctctatatcctcaactacaagcgcgagacgctttcg
cagcttgagatgcgcaacaacctctccatcaccatcaccgctgatggcaagatgacaggt
catcagttcgctattgaaaagggcgaaacccgcgtttcggcctacgctgatcaccgcgcc
gctgcccatgtccgtgtcgacagcgccgttatcgaagacgtgaccgaggaagacgaggtc
gaagagacagaagaagtcgaagcgcgtgcgccggacagcgaaggcgagggttccggccgc
cgccgccgccgtcgccgccgtcgtggtggtcgcaacggtgaccagcagggtcagcagtcc
gccgagggcgccgccgaccaggatgaagaagccgacaacggtggagatgacgatcaggcc
gacggtgaacaggacgctgcccgccaggccgtcgaaggggatgccgatggcgacactcgc
cgccgtcgccgtcgcggccgtcgaggcggccggcgaaaccgccgtgaacagaacggcgac
gcaacgcccgaaactgctgaggccgctgtctccgcgccggaggatgccgtcatcgaccat
gtcgaggtgaacgcagaacctgccgccgacgcacctgctgctactgaggaaaagccggcc
ggaaagcccaggcgcacccgtcgcaagaaggttaccgaaaccgaggaatcagccccagct
gaaacaactccggtagaggccattagcgaagacagtccggccgaagcggacgccgaggaa
aagccggccgagaagcccaagcgcaaacctcgcgcgcgcaagccgaagaccgaagctatt
gaagcagcggcggagcctgcgattgccgaaacggcaccaaccaccgcagctgagcccgtt
gctgaggaaaagccgacgcgcacgcgccgcgccaagaaggagctcccgcctgagggtgtc
gttgtcacctcaagtgccgctccggacgccgaggcttcagcgcccgcagaaggtgagccg
gaaccggaaaagaagaagaaggtcggctggtggcagcgccgcctgggccttggctaa
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