KEGG   Devosia polycyclovorans: ACE4RL_17375
Entry
ACE4RL_17375      CDS       T11232                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dpv  Devosia polycyclovorans
Pathway
dpv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dpv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ACE4RL_17375 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpv03400]
    ACE4RL_17375 (ligD)
Enzymes [BR:dpv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACE4RL_17375 (ligD)
DNA repair and recombination proteins [BR:dpv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ACE4RL_17375 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: XHD29400
LinkDB
Position
complement(3485730..3488282)
AA seq 850 aa
MATKAQDLLKDYKAKRNFAKTQEPAGAAPMRSEGGRGKFVVQKHDATRLHYDFRIELDGV
LKSWAITKGPSNNPADKRLAVRVEDHPLEYGGFEGTIPEGEYGGGTVMLWDRGTWEPVGD
PHEGLANGDLKVRLYGERMKGEYVLVHMKGRDTKRRGAPDRENWLLIKHRDGYARDKNTL
TTRFTRSVETGRDFKAIAAGAKPAKNSSMPAENVWHSDPAEAKKANQKTRVTAKATDAGA
PAFRPVQLATLVDTVPAGDGWLFEMKYDGYRCLAAVAGDRVRLYTRNGLDWTDRFGALVE
PLQELKIGSALIDGEICAFDKGGRTDFTRLKNVLSNGGRLEYFAFDLLEANGEDLTKLPL
LERKARLEKLLARSTKKDPVQYSSHVKGHGQKVLDALCRDGHEGVIAKRADAPYRGERTK
GWLKIKCLKRQEFVIGGWSPSAKRRGFASLLLGTWEGDKLLYRGRVGTGFSQDMLAELER
KLQKLSRKTSPFDAVPKERARSAKWVTPDLVAEIAYTELTGDDILRHPSFIGLRGDKPAR
EVRMEQNQSLDDDGEAVAEKLGVRLTSPDRVVYPGQGITKSQLVAYYEDVAKAMLPHIME
RPLSLVRCPQGRTKHCFFQKHDTGGFPEQLRSRPVVEKDGDRQDYFYVDDLAGLVAGTQM
NVLEWHIWGARFGEIERPDRLVFDIDPDEGLAFSSIVSAAGDIRDRLQDLSLTSFPMVSG
GKGIHVIVPLQPKAEWPEVKAFCKALAQSLADDEPERYTASLSKARRKGRVFIDYLRNER
GSTAICPFSVRSRQGAPVAVPLAWDELPKLKAANSVSLAAAIERARSDPWPNYFKQRQAL
TPDIAASLSN
NT seq 2553 nt   +upstreamnt  +downstreamnt
gtggccaccaaggcgcaggacctgctgaaggactacaaggccaagcgtaattttgccaag
acgcaggagccggcgggcgcggccccaatgcgaagcgaaggcgggcggggcaagtttgtc
gtccagaaacacgatgcaacgcgactgcactacgacttccgcatcgaactcgacggagtg
ctcaagagttgggccatcaccaaggggccgtccaataatccagccgacaagcgattggcg
gtgcgggtggaggaccatcctctcgaatatggaggcttcgaaggcaccattcccgagggg
gagtatggcggcggcacggtcatgttgtgggatcgagggacctgggagccggtcggcgac
ccccacgagggccttgcgaacggcgacctgaaggttcgtctctatggcgagcgcatgaag
ggcgagtatgtgctggtgcacatgaaggggcgcgacaccaagcgccggggtgcgcccgac
cgcgagaactggctgctgatcaagcatcgcgatggctatgcccgcgacaagaacacgctg
accacacggttcacgcgctcggtagagacgggccgtgacttcaaggccatcgcggcgggc
gcaaaaccggcaaaaaacagcagcatgccggctgagaacgtatggcactctgatccggct
gaagccaagaaagccaatcagaaaacgcgggtcacggcaaaggcgacggatgccggtgcg
ccggctttccgcccggtacaacttgccacgctggtcgacaccgtcccggcgggcgatggt
tggctgttcgagatgaaatatgacggctatcgctgccttgccgccgtggcgggagaccgt
gtgcggctttacacgcgcaatgggctggattggacagatcggttcggtgcgcttgtggaa
ccactgcaggagctcaagatcggctcagcgcttatcgatggagaaatctgtgccttcgac
aaaggggggcgaaccgatttcaccaggctcaagaacgtactttccaatggtgggcggctg
gaatacttcgccttcgacctgctggaggccaatggggaagacctgacgaaactgccacta
ttggagcgcaaggcgcgcctcgaaaagctgctcgccaggtccacgaaaaaggacccagtc
caatactcgtcccatgtcaaagggcacggccagaaggtgctcgacgcactctgccgggat
ggacacgagggggtgatcgccaagcgggccgacgcgccctatcggggcgagcggaccaag
gggtggctcaagatcaagtgtctcaagcgccaggaatttgtcataggcggctggtcgcca
tctgccaaaaggcgcggctttgcctcgctgctgttgggcacttgggaaggcgacaaattg
ctctataggggacgcgtgggcaccggcttcagccaggacatgctggccgaactcgagcga
aagctgcaaaagctcagccgcaagaccagtccgttcgatgctgttccaaaggagcgggcc
cgcagcgcaaagtgggtgacgccggacctggtcgccgagattgcctataccgagctgacc
ggggacgatattcttcgccatcccagctttatcggcctgcgcggtgacaagccagccagg
gaggttcgcatggaacagaaccagagccttgatgatgacggcgaggccgtcgccgaaaaa
ttgggcgttcgcctgacgtcgccggatcgggtggtctatcccggccaggggatcaccaag
tcgcaactcgtcgcctattacgaggacgtggccaaggccatgctgccccacatcatggag
cgaccgctcagcctggtgcgatgcccgcaggggcgcaccaaacactgctttttccagaag
cacgatacgggcgggttccctgaacagttgcgatcccggcctgtggtggaaaaggatgga
gacaggcaggactatttttatgtcgacgatctggcagggctggtcgccggaacacagatg
aacgtccttgaatggcacatctggggggcgcggttcggcgagatcgagcgaccagaccga
ttggtgttcgacatcgaccccgatgaagggctggccttttcgtccatcgtcagcgccgca
ggcgatatccgcgaccggctccaggatctgagtttgaccagctttccgatggtctcgggc
ggcaagggcattcatgtcatcgtgccgttgcagccgaaggccgagtggccggaggtcaag
gccttttgcaaggcgctggcccaatccctggccgacgatgaaccagagcgatatacggca
agcctatccaaggcgcggcgcaaagggcgtgtgttcattgactatctacgcaatgaacgc
ggctcgacggcaatctgtcccttttcggttcgctcacgccaaggagcaccggtggccgtg
cctctggcctgggacgaattgcccaagctcaaggccgccaacagcgtctcgcttgccgca
gcgatcgagcgtgccaggagcgacccctggccgaactacttcaaacagaggcaagccctg
acgcccgacatcgcggcatccttgagcaattga

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