Daphnia pulex (common water flea): DAPPUDRAFT_213023
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Entry
DAPPUDRAFT_213023 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_213023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_213023
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DAPPUDRAFT_213023
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DAPPUDRAFT_213023
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-ProteinID:
EFX78439
JGI:
Dappu1_213023
UniProt:
E9GPT2
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MSHLSIQQPPRNLPVSGPTTSGQLTSPNRSGGNVLPQMGNNQRIGVLGQRAVGDKRPSIG
GYGQSMIGGSYFNLPASAPSGLGQAGLAGVRGAFQGLAHGQGTQSQGVQGLQMPFGMPLG
MDGSLAPPSLDLSEFPSLTNRSMGPNENGGSSSLTGRSNYVGIIKTPASETTEFTMSNED
FPALPGTQNNDNNTSTGSGAETSKVSNTSTSSSSVSNTNLNHSKRGLQISADGKVTNIPN
NMVADQFGMAGLLTFIRVAESDSNLVSLALGSDLTTLGLNLNSPEPLYNNFGGPWAENPC
RPQDIDFHVPPEYLTNAVIRDKLAPVKLNRYQEDLLFYLFYTNVGDTMQLAASLELYNRD
WRYHKEERLWITRVPGMPLMEKTGTYERGTYYCFDPNNWRKVAKEMFVEYERLEDRPRDL
QMPAMVLPSAAPQGV
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatttgtcaatacagcagcctcctagaaatttaccagtttcaggtccaaccacc
agtggacagctaacttcccccaatcgtagtggtgggaatgtcttaccccaaatgggtaac
aatcagagaataggagtacttggccaaagagcagttggagataagaggccttccataggg
ggctatggacaatccatgattggtggttcttacttcaacctacctgcatcagcaccttca
ggactaggacaagctgggcttgctggggtgagaggagcatttcaaggattagcacatgga
caaggaacacagtcacaaggagtacaaggattgcaaatgccatttggtatgccactagga
atggatggcagtttagcaccaccttcgctggatttatctgaatttccaagtctgactaat
agatctatgggcccaaacgagaacggtggtagttcgtcgctaacagggagatctaactat
gtgggaattattaaaacgcctgcgtcagaaacgacggaatttacaatgagtaatgaggat
tttcctgctctcccgggtacgcagaacaatgacaacaacacatcaactggaagcggtgct
gagacgagcaaagtatctaacacatccacttcatcgtcatccgtcagcaacaccaactta
aaccacagtaaacgtggacttcaaattagtgccgatgggaaggtgacgaacatacctaat
aacatggtagcagatcagtttggaatggcgggcctcttgacattcattcgagtggcagaa
tccgattctaatctggtctctttagccctcggatctgacttaacgacattaggtttaaat
cttaattcaccggaaccattgtacaacaacttcggtggtccgtgggctgagaatccctgt
cggccgcaggatatagactttcatgtcccacctgagtacctgaccaatgccgttatacgc
gacaaacttgccccagtgaaacttaatcgatatcaagaggacctactcttttatctcttt
tataccaatgttggagacacgatgcaacttgctgcctctctcgaactctataacagggac
tggcgctatcataaagaggagagattgtggatcactcgagtacccggtatgccgctcatg
gagaaaaccgggacgtatgagagaggcacctattactgcttcgatcctaataattggcgt
aaggtcgccaaggaaatgttcgtcgagtatgaacgcttagaagatcggccaagagatttg
cagatgccggcgatggtcttaccttcggctgcaccacaaggcgtgtaa
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