Daphnia pulex (common water flea): DAPPUDRAFT_218645
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Entry
DAPPUDRAFT_218645 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
dpx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DAPPUDRAFT_218645
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_218645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_218645
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_218645
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DAPPUDRAFT_218645
mRNA degradation factors
5'-3' decay
Lsm complex
DAPPUDRAFT_218645
Spliceosome [BR:
dpx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
DAPPUDRAFT_218645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-ProteinID:
EFX67578
JGI:
Dappu1_218645
UniProt:
E9HL09
LinkDB
All DBs
Position
Unknown
AA seq
135 aa
AA seq
DB search
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVVAKGRGRSDGKGRGGAQRGGRGGSRGSFGASRGRGAP
SGRGGGGGNNKPRGK
NT seq
408 nt
NT seq
+upstream
nt +downstream
nt
atgttacccttgtcgctactacgtacagcccagaatcatcccatgttagtggaattgaaa
aatggggagacttacaatggtcacttggtgagttgtgataactggatgaacatcaatcta
cgagaagtaatttgcacctccaaggatggtgacagattttggagaatgcctgagtgttac
attagaggcagtaccatcaaatatcttcgaattccagatgaagtcattgatatggttaag
gaagaagtagttgcaaagggtcgtggtcgcagtgatggtaaaggaagaggtggagcccaa
agaggaggcagaggtggtagtagaggttcttttggtgcttcaagaggtcgaggcgcgcca
tcgggacgaggtggtggtggtggcaacaataaaccccgtggaaagtaa
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integrated database retrieval system