Daphnia pulex (common water flea): DAPPUDRAFT_219465
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Entry
DAPPUDRAFT_219465 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03013
Nucleocytoplasmic transport
dpx03015
mRNA surveillance pathway
dpx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DAPPUDRAFT_219465
09122 Translation
03013 Nucleocytoplasmic transport
DAPPUDRAFT_219465
03015 mRNA surveillance pathway
DAPPUDRAFT_219465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_219465
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_219465
Enzymes [BR:
dpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAPPUDRAFT_219465
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DAPPUDRAFT_219465
Spliceosome [BR:
dpx03041
]
Complex C
Other components
EJC/TREX
DAPPUDRAFT_219465
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DAPPUDRAFT_219465
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
EFX64849
JGI:
Dappu1_219465
UniProt:
E9HTR5
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNEDLLDYEDEEATEQVAVEGAGDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVENQVSVLVLCHT
RELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCPHIVVGTPGRILALVRS
KKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVVIFVKSIQRCMA
LCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVATDLFGRGMDIERVNIVFNY
DMPENSDSYLHRVARAGRFGTKGLGITFVSDENDAKVLNDVQERFDVSITPLPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgaagatcttttggattacgaagatgaggaggcgacggaacaagtagcc
gttgaaggagctggagatgccccagcgaagaaagaagttaaaggcacatacgtatccatt
cacagctctggttttcgagattttctgctcaagccggaaattttgagagctatcgttgac
tgtggttttgaacatccttctgaagttcagcatgagtgtattcctcaggctgttttggga
atggatgtcttgtgtcaagccaaatctggtatgggtaagactgctgttttcgtattggcc
accctccaacagttggaaatggtggaaaatcaggtttctgttcttgtcctgtgccataca
cgagagctagctttccagatctccaaggaatatgaacgtttttccaagtacatgactacc
atcaaggttggtgtattctttggtggtttaaatattgccaaagatgagcaaactttgaaa
tcaaattgtcctcacattgtggttggaacccctggtcgtatcctggcgctggtccgctcg
aagaaactaaacctccgcacacttaagcacttcgttcttgacgaatgtgacaaaatgctt
gaagctctagacatgcgtcgagatgtgcaggagattttccgcaacacacctcatgaaaaa
caagtgatgatgttcagcgccacgctgagcaaggagatccgtcctgtctgcaaaaagttt
atgcaagatccaatggaagtatacgttgacgacgagtccaaactcactcttcacggtctc
cagcagcactatgtcaaactaaaggacaacgagaagaaccgaaaattatttgagctgctt
gacgtacttgagtttaaccaggtcgttatcttcgtcaaatccattcagcgttgtatggcg
ctctgccagttgctaggcgagcaaaacttccctgccatcgccattcaccgtagcatgact
caggaagaacgtttgtcgcgttaccaacagttcaaagatttcaaaaagcgaattttggta
gctacagatttgttcggtcgtggcatggacattgaacgtgtcaatatcgtttttaactac
gacatgcctgaaaactcagactcgtacctgcatcgtgtcgctcgcgctggtcgttttgga
actaaaggattgggaatcacatttgtaagtgatgagaacgatgctaaagttttgaatgac
gttcaagaacgtttcgacgttagcatcacaccgttgccagatgagattgatttgtcatcc
tatattgagggacgttaa
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