Daphnia pulex (common water flea): DAPPUDRAFT_220148
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Entry
DAPPUDRAFT_220148 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12600
superkiller protein 3
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_220148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_220148
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
DAPPUDRAFT_220148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_17
TPR_2
TPR_14
TPR_19
TPR_CcmH_CycH
TPR_11
TPR_1
TPR_16
TPR_8
TPR_12
ARM_TT21_C
TPR_7
TPR_9
TPR_COPA_B
ANAPC3
T7SS_EccA1_N
TPR_Slam
TPR_NPHP3
ChAPs
SPG48
WHD_ROQ1
ARM_TT21_N
Motif
Other DBs
NCBI-ProteinID:
EFX90284
JGI:
Dappu1_220148
UniProt:
E9FQY4
LinkDB
All DBs
Position
Unknown
AA seq
1351 aa
AA seq
DB search
MEYDVKKALKDAKEFIKNKEYTSALDTCKGILKHDKSNYLSWVLSAVSFQELGQSDKALT
AFVKATELQPDQLTAWQGLAAFLEQERNKTVITTDGGQQANDLSEKLCTVYRKLECLFES
DPVKQSNILKKQCELYTSLGQLENCTDRANILLKKNDKEVIKFVAKVLSPVLSHLDHQFL
QILGDSLSEIINTDEEINQFFREQYLLILLQQKQYLKAVNVASGILSSDPKNVRCLEAIC
LAFVEEEKIDISLDRIGEIIDALLSVNKNDHGMLAKARWFLLKEKSMEARQLLELINTKE
ATRKSQLFLCDAYQQLHQWSKMENVCRAGLESATESDRLSLRLRLIKSLIEEDGVDRLNE
ASVILETVRDEAKSSVTFRLLETLILLRTDQLEKCKNNLDLLEQQQPTDNMEQVLLMKAE
YLQKTVRDIEAVELLDRACENHPQNVALLLNAAKMLWKRSDQREKSVTIMLNVIKINRDI
AEPYILLGTFYGEQRHNPSSMQRAVRCLEKAFQLDPYQTRTSEKLLELYRLIDDITSALK
LLDVVVHSNAKNRRWAWLQKGLLHLKMFQKVKQVSDKEKEAGLAITCLQNAMAIDSNDSS
GWEALGEAYIARGSYTAALKAFQRASELNSQSTYSSYQIASIKQIMGENAEAVTAFEELL
KQTPDYVPALKGLAETLLNQAAEYLTDGFTGRLVDCCSKALDMLVKASRLNSHLACVWSL
LGHVCLLLRSIPEDDFTLLDVPPVLLSDENSPVAKKLLMEMGPKFFLSALRLLPDSAALW
HNLALSYQSCWMVDESVAHKSSALAAIKKAITLEPKDSSHWDLLGQIAEQPAIRQHAFIR
ALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVSAWIGQGIIAEQLS
PAEAMDLFRHTSTIGSGSPGQCEGSPSYAQWVMNTLADPLAKQTAHYRYSIVQMHAVPAA
IDSLVKYVALYPDDSCALNLLGLLYERQGLFTKAEEAFLKGIQHLSLDDTTINRTRIDKM
KANLARLYTSMDRCDDATELYGSLQESELSSACGIALAHFKANRHAEAYVTYEAALHWLA
SDDEKRSHLLVAMAMAAFRRDFPDAEAAKLLLYESSQLQPPSVYGLLALGALGLLTDDET
LTTAAFQELLPYQTESRYVADISRLSAYQQSVIGNELQGQREIVRNIHMLPNVAELWTLL
ASFKASLTVQASHPLSSDGLQVARWAEIAFDARRQSDSAVDHVFQPIDLSQVISLISLGY
LLAGQGSTSLITAQKAVHCNPHSAASWSVLLAAALPSWGGSAAGDEQLHRLSWLKKLIEH
LRRKCDVTAYSRLTPWLGHYERRLVSLLSKA
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgacgtaaagaaggctttaaaagacgcaaaagagtttattaaaaacaaggag
tacacttcagccttggacacctgtaagggcatattaaaacatgataagagcaactacctt
tcttgggttttgagtgctgtctcttttcaagaactcggccaaagtgataaagcattgaca
gcatttgtcaaagcaacagaactccaaccggaccagctcactgcctggcaaggtctagca
gctttcttagaacaagaaagaaacaaaacagtgattactactgacggtggtcaacaggca
aatgatctttcagaaaagctttgtactgtttacagaaaacttgagtgcctttttgaaagt
gatcctgtaaaacaatcaaatattttgaagaaacagtgtgaactatacacttcattagga
caactggaaaactgcactgacagggcaaatatactcttgaaaaagaatgacaaggaagtt
atcaagtttgttgcaaaagtattgtctccagtattgtctcatttagatcatcaattcctt
caaattttgggagattccctcagtgaaataatcaacactgatgaagaaataaatcagttc
ttcagagaacaatatcttttgattttgttgcagcagaagcaatatttgaaagcggtcaat
gttgcgtccggaatactgagttcggaccccaaaaatgttcgatgtctggaggccatttgc
cttgcgtttgtcgaagaagagaaaattgacatttcgctggacagaattggtgaaatcatt
gatgcattgttgtcagtgaacaaaaatgatcatgggatgttggctaaagcgagatggttt
ctcttgaaagaaaagtcaatggaagccagacagttattagagctgattaataccaaagaa
gcaacgcggaaatcgcaacttttcctgtgtgacgcctaccaacagttgcatcagtggagc
aaaatggaaaatgtttgtcgcgccggcttagaatccgcgaccgagtcagacagactttcc
ttgagattaagattgatcaagagtttgattgaagaggacggagttgatcgccttaatgaa
gcgtcagtcattttagaaactgttcgagatgaagcaaaatcatccgtaacgttccgatta
ttggaaactttaattttgttgcgtaccgaccaactcgaaaagtgtaaaaataatctcgac
ctgttggaacaacaacaaccaacggacaatatggaacaagtgctactcatgaaagctgaa
tatttgcaaaagaccgtaagggatattgaagccgttgagttgctagatcgtgcttgtgag
aaccacccccagaatgtcgctttactcctgaacgcggccaaaatgttatggaagagatct
gatcaacgtgagaagagcgtcactattatgcttaatgtcatcaagatcaatcgagacatt
gctgaaccctacattttgttgggaaccttttacggcgagcagcggcacaatccttccagc
atgcaacgtgccgtgcgttgtctggagaaagccttccagctggatccgtatcaaacccga
acctctgagaagctgctggaactctaccgtttgattgatgacattacaagcgctcttaaa
cttttggatgttgtcgttcactctaatgctaaaaatcgacgatgggcttggctgcaaaaa
ggtctcctccacttgaaaatgttccagaaagtgaaacaagtttcagataaagaaaaagaa
gccggattggctattacttgcttgcaaaacgcaatggctatcgattccaatgatagttcg
ggctgggaagctctgggtgaagcatatattgctcgaggatcttacactgcggcattgaaa
gcgttccagcgtgcgtctgaactgaattcccaatccacttattcgtcgtaccaaatcgca
tctattaaacaaatcatgggagaaaatgccgaagccgtaaccgcatttgaagagctcctc
aagcaaaccccggattacgtgcctgctctgaaaggacttgcggaaactcttttaaaccag
gcagccgagtatttaaccgatggattcaccggcagattggtggattgctgctccaaagct
cttgatatgctcgtaaaggcgagtcgactcaattcacatttagcttgcgtctggtctcta
ttgggccacgtctgtttgctacttcgatctattccggaggacgattttacgctgctggac
gttccgccagtgctcctttcagacgaaaattcgcctgtcgctaaaaaactattaatggag
atgggtccgaaattctttttgtctgctctgagattgttgcccgattcagctgcgctgtgg
cacaatttggctttgtcgtatcagtcttgctggatggttgacgaaagcgtagcacacaaa
tcctctgcgttggcggctataaaaaaagccattactttggagccaaaggattcgtcacac
tgggatctgcttggtcaaatcgctgaacaaccagccatccggcaacacgcgtttatccga
gctctggaactaagtccaaatgcaccgagaactgctgccacctggactcatcttggagca
ttgtacatggaaaatggagatctccatcttgctcatgaatgcttcaagcaatctcaaaac
attgacccgttccatgtttccgcctggattggacagggaattattgccgaacaattgagc
ccagccgaagccatggatcttttccgccatacttcaaccatcggtagcggtagtcccggt
cagtgtgaaggaagtccgtcgtacgctcagtgggttatgaacaccttagccgaccccttg
gctaaacagacggcacactatcgctacagcattgtacagatgcacgctgtaccggcggcc
atagatagcctagtcaaatatgtagctctctatcctgatgatagctgcgcgctcaattta
cttggactcctttatgaacgccagggattgttcacgaaagccgaagaagcatttttgaaa
ggaatccaacatctaagtctggatgatacgacaatcaataggacccgcatcgataagatg
aaagctaatctggccagactttacacgtccatggaccgttgtgacgacgccactgagctg
tacggatccctacaggaatcagagcttagttctgcctgtggaatcgctttggctcatttc
aaagccaacagacatgccgaggcttacgttacttacgaagcagccttgcattggttggcc
tcggatgacgagaaacgttctcacttgttagtggccatggctatggctgcattccggcgc
gatttccctgacgcagaagctgccaaattgcttctctacgaaagctcgcaattgcaacca
ccatcagtgtacggtctgctggccctcggagcacttggactgctaacagacgacgagact
ttaacgacagccgcttttcaggaattgcttccctatcaaacagagtcacgttacgttgca
gatataagtcgattatcggcctatcagcaatcggtcattggaaacgaactgcagggacag
cgtgagattgttcgcaatattcatatgctgcccaatgttgccgagctgtggacattgctg
gcctccttcaaagcttcacttacagttcaggcatctcatcccctatcatcggatggattg
caagtggctcgttgggcggagattgcattcgatgcgcgtcgccagagcgattcggcagtg
gaccatgtctttcaacccattgatttgtcacaagtcatttcactcatcagtttgggctac
ctgcttgcggggcaaggatctacaagtctcataacggcacagaaggctgtccactgcaac
cctcattcggccgcttcgtggtccgtcttactcgcagctgctctcccttcttggggaggg
tcggccgctggtgatgaacaacttcaccggttaagttggttaaagaaattaatcgaacat
ttacgtcggaaatgcgatgtgaccgcttattctcggttaactccttggcttggccattac
gaacgacgattagtctcattattgagcaaagcttga
DBGET
integrated database retrieval system
