Daphnia pulex (common water flea): DAPPUDRAFT_224715
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Entry
DAPPUDRAFT_224715 CDS
T04347
Name
(GenBank) putative SMC6, structural maintenance of chromosome protein 6, copy B
KO
K22804
structural maintenance of chromosomes protein 6
Organism
dpx
Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_224715
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
DAPPUDRAFT_224715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
Crescentin
AAA_21
ERM_helical
CLZ
SMC_hinge
ArfA
Motif
Other DBs
NCBI-ProteinID:
EFX80525
JGI:
Dappu1_224715
UniProt:
E9GJ94
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MELINRIENPCSYQISKLVKLRPGAKVGSWCGLVLPLSMIFSCLKDHETVSISYKLASIC
STVSLVFLYMNLFNKKPLITHVTALVVALSGCLLTGTALITVMKFMCFMILINIKSYTFL
CKLFLHFPCSFSIGEAILAVQGTIVFCFVSISNCVLDGSNLSTAFCQIFLLGIGMFLLGT
GLIQKCQQLLPFTLLLFTVMGTVTLPIMLLVMKKNPITWFLIDFIFLDTTRVFLILYWLA
CTILALAIAWWFGNGSSVKLTVLRKYFHGVVIAIYLPGVFFDTELLFVASVMVLAAFLLL
ESVRLYNLDYVGDILNKNMAGFLDEKDQGTLILTHIYLLIGCSLPIWIFPLKSAMDTTDK
LLLCSGVVSLGIGDTAASIGGTLWGKNKFPGSSKSIEGTVCSILAEILFVIIMFHFGKNG
SGKSAVLTGIVVALGERASATCRGQSIKDFVKTGKSKAVVSVTLINKGKGSYKRKIFGDT
ITIERTINASTGSGGYKIFNEQRKLISDKRSDLNRILAQMNIQVDNPVCILNQETAKNFL
HSNDAQQKYKLFERATQMDAMRNEYSVAEDEISRSKACMREKLQSLEILNADLSKWKTKK
EWYKAINEIHDKKAKLENEIFWAQVEGFEKKASEALQKKNHQQSEIEKARVKIQEHEQRL
VELQEKFQSRKVDAVEKKKELQIAREEFSVVDNQLTGMKNRQGTFQNDLRQLGNEKQRLM
KDKAELIAEIDKLNREYGDSEHAKRKERREAELHQLNEKLENLESSRKVSEHQVEQLKNA
LIQLRNETLAVRSELTRTHNSLGSYIKLRDRTWAPVVEHYFGPRLSCFVCSNDEDAKLLQ
KIVHEEAPRNGQAPKILVSCTNGQVHDVREHKVHCSEELISKDIHCLMDMLIIEDNEVTN
VLIDLNGIEQVLLIGNDRDACYLLSDSSRVPYNCKSAITKEGNTYHPDPNYRSYCGRVGN
TARYLQASVEDAIRNLHEEIENLQRDEIRIGQNLKNFSMQIQNNEGQLRNEESKLSSTRR
EISDGNRKKKTLELENVEGGSTDVLALKEDLADVENKLERIDDDIQTKTDNFEELKREMQ
KLRQIVNQHQATISSLMADSGPLQDSFRYMETQQRNIKEIIDKLSASLASMQSKLDSFEA
DYEEARAKAESEAALAAQASSRAPVTKSLKNLNSELRQLEQQIVAQEKELGSRDHVFAEY
RRRKVDYERAFSEVTGVQSSLKKMMEMSKKRKDFIRIFRNSIEARTHHIFRALLRTRNFE
GELSFDHNEKTLSLMVVPPGRDGSSQPATKRGRESGATDIRSLSGGERSFATVCFILSLW
DATESPFRILDEFDVFMDHVNRSICMELLVTEARENSGRQFVFLTPLGLEKQQLNNMDDL
SIFRMDDPNRRE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggagttaatcaatagaatagagaatccatgtagctaccaaatcagtaaacttgtaaaa
ttaaggccaggagcaaaggttggatcatggtgtggattggtcctgccactttccatgata
ttttcttgtttaaaagaccatgaaactgtttccataagttacaagttagcgtccatttgc
tcaacagtgtcattagtcttcttgtatatgaatctgtttaacaagaaaccactgataaca
catgttacagctttagttgtagctctttctggttgtttactaactgggactgcactgata
actgtgatgaaatttatgtgctttatgatcctcattaacatcaagagttacactttcttg
tgtaaactttttcttcactttccatgcagcttttcaattggtgaagcaattcttgctgtt
cagggaacaattgttttttgttttgtttcaatatcaaattgtgtgttggatggctccaat
ctcagcactgctttttgtcaaatttttcttttgggaattggaatgtttcttcttggtact
ggcctcatacaaaaatgtcaacaacttttgcctttcactctactgcttttcactgtgatg
ggaactgtaacacttccaattatgcttctagtgatgaaaaagaaccctattacctggttt
ctgatagactttatttttctggacacaacaagggtatttctcatattgtattggctagca
tgtactattttggccttggcaattgcttggtggtttggaaacggttcttccgtcaagtta
accgtcctgcgcaaatatttccatggcgtcgttattgccatctatttgcccggagtattt
ttcgacactgaactactctttgtagcttcggttatggtcttggctgcctttcttctattg
gagtcagttcgactgtacaatttggactacgtgggagacattctgaacaagaacatggct
ggttttctcgatgaaaaagaccaaggaactctcatactcactcatatctacctactgatt
ggttgttcgttaccaatatggatcttccctctcaaatcagcaatggacacaacagataaa
ctgctactgtgctctggtgtagtgtcacttggaatcggagacactgctgcaagcattggc
ggaactttgtggggcaaaaacaagtttcctggtagctccaagagtatcgaaggcacagtg
tgctctatattggcggaaatcctgttcgtaatcatcatgtttcatttcggaaaaaatggc
agtggaaaaagtgcagttctcacaggaatagttgttgctcttggtgaaagggcttcagcc
acatgtcgtggtcaaagtattaaagattttgtaaaaactggaaaatccaaagctgttgtc
tctgttactttaataaataaagggaagggttcctacaagcgaaaaatttttggtgatacc
atcacaatagaacgaacaatcaatgcttcaacaggaagtggaggatataaaattttcaac
gaacaacggaaactcataagcgataagcgaagtgatctaaatagaatcctcgctcaaatg
aacattcaagtggacaatccagtatgtattttaaaccaagaaacagcgaagaactttttg
cacagcaacgacgctcagcagaaatacaagctgtttgaacgtgcaacacagatggatgcg
atgcgtaacgagtattcagtagcagaggatgagatatcaagaagcaaggcttgcatgaga
gaaaagttgcagagtttggaaatcttaaatgctgatttgagcaagtggaagaccaaaaaa
gaatggtataaggcaatcaatgaaatccacgacaagaaagcaaaattagaaaacgaaata
ttttgggcgcaagttgaaggtttcgagaagaaagcgtctgaagcattacaaaaaaagaat
catcagcagtcagaaattgaaaaggctcgtgttaaaattcaggaacatgaacaacggtta
gttgaattgcaagaaaagtttcaatcacgcaaagtagacgccgtcgaaaagaagaaagag
ttacaaattgctcgagaagaattctctgttgttgataaccaattaaccggaatgaagaat
cggcaaggaacgtttcagaatgatctcaggcaactgggcaatgaaaaacagcgtcttatg
aaagataaggcagaactgatagcggaaattgacaaattaaatagggagtacggcgacagc
gaacatgctaaaagaaaggagaggagagaagcagaattgcatcaattaaatgaaaagttg
gaaaacttggagtcgtcacgaaaagtttctgaacatcaagtcgaacagctaaaaaatgct
ttgattcaattgagaaacgaaactttggctgtgaggagtgaattgacgcgtactcacaat
agcttaggttcttacattaaacttcgcgacagaacttgggcacctgtagtagagcattat
tttgggccgaggctttcatgcttcgtttgctccaatgatgaagacgccaagttactccag
aaaatagttcacgaggaggcgccgcgaaacggacaagctccaaaaattcttgtttcgtgt
acgaatggccaggttcatgacgttagggaacacaaggttcattgcagtgaggaattgata
agcaaagatattcattgtttaatggatatgcttataattgaagataacgaagttacgaat
gtcttgatagacttaaacggcattgaacaagttctccttattggtaatgaccgagatgcg
tgctatttattgtcggattcctctcgagtgccttataattgcaaaagtgccatcaccaaa
gaaggaaatacttatcatccggatccaaattatcgttcttactgtggaagagtgggaaat
acggccagatatcttcaagcttcggtggaagacgcaattcggaatttacacgaagaaatt
gaaaacctccagcgcgatgaaataagaatcggccaaaacttgaaaaacttcagtatgcaa
atccaaaataatgaagggcagttaagaaacgaagaatcaaaactctcgtcgacacggaga
gaaatatctgatggtaataggaaaaaaaagaccctcgagttagaaaatgtcgaaggcggt
tctacggatgttctggctttgaaagaagatttagctgatgtggaaaataagttggaaagg
attgatgacgatatccaaactaagacggacaatttcgaagaactaaagcgtgagatgcaa
aaattacgacaaattgttaaccaacaccaggccactatttcttccttgatggcagacagc
gggccattgcaggactcgtttagatacatggaaacccagcaaagaaacatcaaggagata
attgataagttgtctgcttcgcttgccagtatgcaatcaaagttagattcctttgaagca
gattatgaagaagctagggctaaagcagaatcggaagccgctttggctgcacaggcatcc
tctcgtgcaccagtgactaaatctttaaagaacctgaattcagagttaagacaattggag
cagcaaatcgttgcacaagaaaaggaattaggatcccgtgaccatgtttttgcagaatat
cgaaggcgcaaagtagattatgaacgagctttctcggaggtcacaggagtacagagttct
ttaaaaaaaatgatggagatgagcaagaagcgtaaagatttcatacgcatatttcgcaat
agtatcgaagcaagaacacaccacatttttcgtgcccttctaagaactcgtaattttgaa
ggagaactttcgttcgaccacaatgaaaagacgctatcattgatggttgtcccacctggt
cgtgatggatcctctcaacctgcaactaaacgcggtcgtgaaagtggtgcaaccgacatt
cgatccttgagcggtggagaacggtctttcgcgacggtttgcttcatattgtcattgtgg
gatgccaccgaaagcccattcagaatcctcgacgagtttgacgtatttatggaccatgtt
aatcggtcgatctgtatggagttattggttactgaagcaagagaaaactcaggacgtcaa
tttgtttttctcacgccccttggattggaaaagcaacagctgaataatatggacgaccta
tccatcttcaggatggatgatcctaatcgtcgggagtaa
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