Daphnia pulex (common water flea): DAPPUDRAFT_228726 Help Entry DAPPUDRAFT_228726 CDS       T04347                                  Name (GenBank) hypothetical protein   KO K08873   serine/threonine-protein kinase SMG1 [EC:2.7.11.1] Organism dpx  Daphnia pulex (common water flea) Pathway dpx03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:dpx00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     DAPPUDRAFT_228726  09180 Brite Hierarchies   09181 Protein families: metabolism    01001 Protein kinases [BR:dpx01001]     DAPPUDRAFT_228726   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:dpx03019]     DAPPUDRAFT_228726 Enzymes [BR:dpx01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.11  Protein-serine/threonine kinases     2.7.11.1  non-specific serine/threonine protein kinase      DAPPUDRAFT_228726 Protein kinases [BR:dpx01001]  Serine/threonine kinases: Other   PIKK family [OT]    DAPPUDRAFT_228726 Messenger RNA biogenesis [BR:dpx03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Other surveillance factors      DAPPUDRAFT_228726    mRNA cycle factors     Common to processing body (P body) and stress granule      DAPPUDRAFT_228726 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  SMG1 PI3_PI4_kinase FRB_dom Motif Other DBs NCBI-ProteinID:  EFX69271 JGI:  Dappu1_228726 UniProt:  E9HG82 LinkDB All DBs Position Unknown AA seq 2744 aa AA seqDB search MMDRVLDEETENGNPQEDGKKMYEQEEYSGTDSDEDEVQYGARRRKPEKGTFRGNKLYGD KTQGRGKVLIFSPSPNHENGRGRGRDYVRSRGRGSRASASEDHEDGSNYSRKTNFRGKAY DKMNDSNENFSSEDGRIGRQLRLLSRETDEEVIIKICQQLQEAFLLQDNLRYIRYNLIPI GNSLIETYKLINSTQARQTVSLAISRLGFVSDHDFNSFAKWILSAYQKEANEKVCCSIME ALTELLLPGLQSALESADTPDLFESTLNPVLLIAVKNPTSFLPYFRDTVDILVGWFVDPA QPVKVIRSATRALQILRPFWKEDLTFSKTLLSQFLEDLDAYAAETNALLVTPAPPGEDIL AVSLRKIASLLSVFVVVGAQVCLLPETSIFSPGFLNIALSKVSLCAGELLLRVGEMDETD VEGSALGDVIQFANGCLSLLVRWLGNRVTPEAMKPCFDLMEHQVKSATKYEYPLLISMLQ LMTCLAEQQIVASHLPLETIQHWMEVSSWVICSARSREILTHVAKLLRAIVKVKNVSLLI EVYRRLASDLDNCFTILREKGNGKVHVCSETEENALLLLSPLADLGRSSSLVGMWALEPS LLELLVGKLQPADRIQSLYHNHPALCLGILRVLHCHAKSHSHFVANSCLLVNAASGSKSL HGCISPTSGNLSLILNLLTDLCLEFSRISTCEASKILLLQWSGQLLDTCKPCTSQLNQSE LFQRFLSSVVGFCESTSAHHPFAVELLLSSLLDLPEITLKTELAAQVAMICIRQLRNDSQ SSNFLHLLGRFPPQIVLDATCRIKKDLLTGVPVASFESMYSFYMGGCKSNSAQPANCDLP LWLAVQSALLCVNSKLRTPLGKAQDTFLAIEDAIKSAAGRPSGQESVTEQNLAQLNRIRL LLSFYEMLEKFMYNAFDGCSIALPQAPKAIRVFFRTNQTTCQEWVNRMGCAALTASVRVG RHASAARFGLNLLAHWTHTRRAVDSADLENVLQQVVQSLIKLGASQQIRGLKSWMTAPKQ ADFFHLINVDFLEAAALQADSKYEKAIEFYSTTEGQPTSFICSQVIDSYLALSDWEGFIN WKSQTVEWINNVPQSKKQIADLMEAFDRNAHLQWPEKSSPALEVQWSVENLMSEAKSGLS MAADRIRASRSVYLAPACSWKILETLVGSSLELSNFAIEESVASLLPLAHALSHKNDSAY LWMQHTHSVLKGASCTGLKYCSSKTGVEWSRWLHWYSSLDRQAADITTACAEMDLSIVPQ ARLEGNLRLAERQLLRTMNSSQVLVQSHDMATQLMNEALKMNLTCISSTRLAILRQFEGA KLLHQKGETDAAISVLTQCSLALSRSLQGSQNAADAILPHMAESYTLLAKWLQQSLEGAS PLKNIATLKELANAGAVDQDHAALVSKLMERASQFCPSSSEAWLAWGQYQYSGAQQQTHI KSLLTGVLSAEDIGRLSESFDELSGDVEKVLTSDSILSKKPTVLKRLVSEVQSRQVSAVE SYSGSLKAFFQYLNLRGSSSNQSHHRDTVDVTLRILCILSRHLDRKLDSTIDGEFIQTLS DATERTPSGAWRSITPQLFSLMQHGRPWLRTLVCNLLGRLASEWPQLLVFPVAVGAAGLA WSWSTDPINLNESGDEPDEANVEEAKTELCSASELQTVYQGVMDEMKMQVPEMVQDVRLL LTELRRLVLLWDELWVAVLQQMHPQVEQLLHKLQSQAQKLNKKTGLNDADKKELLQKHFI VLFKPVLLVLEAVAKITNLSPQTPHENWFTQRYSKTINDGIESFKEGCNSERTVAELWLP FKNMLQQLQHINYRRSVLKLDDVSPALKLMKDTKIPMPGVNDSKQVPTLFIKCVENVIIV LPTKTKPKKFVFVGTNGKRYAYLFKGMEDLHLDQRIMQVLSLTNVLLSDSKNRYRARHYG VIPLGPRSGLIQWVEGVTPLFALYKRWLQRQAANIVQGKGEKDNTATSVPRPSELFFNKL TPLLEAEGLSADPRQRNQWPIEILRRVQAELMEETPKDLVARELWAGSLNAEQWWSSTLR FGQSCAVTSVIGYTIGLGDRHLDNVLVDLRCGEVVHIDYNVCFEKGRQLRVPENVPFRMT ANIQHALGVAGTGLEGTFRLSCIDVMKMMRENRELFKILLEHFVYDPLIDWRTPLPSTSH ESTLIPLYVVNPALAAQCSIQKRIAETDSTFKLFELRMSELGPDWSLNHDEMVSILSSLK ESSSAWGDIHQQIERLQEEVQDLHQDRLVLFDVRSDKNHVMRQPQQLSTILLPLRTAWEG EKSVRAALRTLVEDNSKWTQLYLMAFSSLTSGQLKRWADEINCPSLSTDNHETGFPLAVE FLNTSGQTALAHQGQLLDQQESELFDNLEDTLMGQRLMLMMSLFQSCSDWSEGFQTGQIS RELQQDSFVDKFQRMASTWMVQFLSGATSFCVVRLCIHLADESTSTENGPSTSIEDLIAI KRSSMKSQDLSEELLDEASELVHSIGEQWRKSELVKLAHQRQEIDQSLAQLLQQQLSAHS WLHDTNVGINSTCGLFIHNLKQSLSVLLSQSPQLTEFHQQVTQLATQVEQRLKWAVGANS SLLKVLNEFTELHNKCLQRIQSLSSLATALASVSSAILHYESFRTRTPEALAVDSTFVQL LSQCQDVCLLKDCGTNGRLTDAEVRLAQRINVGEQGATENWINQTEKYITDKILASKDRM NELVSKQSTRVEELHELNAIMRSQLAVHHQLISDVRSVLKIMAK NT seq 8232 nt NT seq  +upstreamnt  +downstreamnt atgatggatcgagttcttgacgaagaaactgaaaatggaaatccccaagaggatgggaag aaaatgtatgagcaagaagaatatagtggcactgattctgatgaagatgaagtccagtat ggagcaagaagaagaaaacctgaaaaaggaacatttcggggaaacaaattatatggagat aaaactcagggaagaggaaaagtcctaatattttctccatctccaaatcatgaaaatggt aggggcagaggcagagattatgttcgtagcagaggacgtggatcacgggcatctgcttct gaagaccatgaagatggatctaactattccaggaagacaaactttcgaggcaaagcttat gacaaaatgaatgactcaaatgagaatttctcatctgaagatgggcgaattggtcgtcag ttacgtttactttctagggaaactgatgaagaagtcattattaaaatttgccagcaatta caggaagcatttctgttacaagataacctccgctatattcgctacaacctcatccctatc ggcaacagcttaattgaaacttacaagctgataaacagcactcaagctcgacagaccgta tcattggctatctctcgtttgggatttgtttcggatcacgactttaatagttttgccaaa tggattttgtctgcatatcagaaagaggcaaacgagaaagtttgctgttccattatggaa gctttaactgagctgttgcttcctggacttcagtcggcattggagtcagcagatactccc gacttgtttgagtcaacacttaacccagtgctgttgatcgctgtgaagaatcctacatca tttcttccttatttcagggacacagtagatattttagttggttggtttgttgatcctgcc caaccagtgaaggtgattcggtcggccaccagggcacttcagatattgcgtcctttttgg aaagaagacctaactttctcgaaaactctcctatctcaatttcttgaagatttggatgct tatgcggcggaaaccaatgctctgcttgtaacccccgctcctcccggtgaagatattttg gctgtatcgttgcgaaaaatcgcctctcttttaagtgtgtttgtggtcgttggagcccaa gtctgcctcctgccggaaacttcaattttttcacctggctttcttaacattgcattatcg aaagtaagcctatgcgcaggagagcttctactgcgggttggagaaatggatgaaacggat gttgaaggcagcgccttgggggatgttatccagtttgcaaatggatgtctctcactcttg gtaagatggttgggcaaccgagtcactccagaagctatgaagccatgtttcgatcttatg gaacaccaagtcaagtcagcaactaaatacgagtatcctctgttaatcagcatgctgcag ttgatgacttgcttggctgagcaacaaatagtagcttcacatctgcctctcgaaaccatc cagcactggatggaggtatccagttgggtgatctgttcagcacgcagccgcgaaattctt actcatgtagccaaactcttgcgtgcaatcgtgaaagtgaagaatgtctcgttgttaatt gaagtctacaggcgattggcatcggatttggacaattgttttacaattttgagagaaaag ggcaacggcaaagttcacgtttgcagtgaaactgaagaaaatgcattactacttctctct ccgttagctgatctcggtcgaagtagtagtcttgtgggaatgtgggcactagaacctagc ttgttagagctattggtcggtaagcttcaaccggccgatcgaattcaatctctttaccat aatcacccggccttatgtttgggaatcctgagagtgctgcactgccatgccaagagccat agtcatttcgtagccaacagttgtttattggtgaatgccgcttctggcagcaaaagcctg cacggctgcatatctccaacgagcggaaatctttcgctcattttgaatttattgacggat ctgtgtttggagtttagtcgcatttctacttgcgaagccagcaagatcctccttctgcaa tggtccggacagttgctggatacttgcaaaccttgtacgtctcagctaaatcaatcggaa ctgtttcaacgttttctttcatccgttgttggattttgcgaatcaacatccgctcatcat ccatttgccgtggaattgttgctgtcctctttattggatttaccggagatcactcttaag acggaattggctgcccaagtagccatgatatgcatacgtcaattgcgcaacgattcacaa tccagcaattttctccacttgcttggacgatttccaccacaaatcgttctagatgccaca tgtcgaatcaaaaaggatttgttgactggtgtcccagttgcctcgttcgaatccatgtac agcttctacatgggtggttgcaaaagtaatagtgctcaaccagcaaattgcgatcttcca ttgtggctcgctgttcagtctgcattactttgcgtcaacagcaaattacgaactcccctt gggaaggcgcaagacacatttcttgccattgaagatgccatcaagtctgcagcggggcgc ccttctggccaggaaagcgtaacagagcagaatctagcccagttaaaccgcattcgactt cttctatcgttttatgaaatgctggaaaagttcatgtacaacgcatttgatggttgcagt attgctctaccgcaagcaccgaaggctattcgggtcttctttcgcaccaatcaaactacc tgccaagagtgggtaaaccgtatgggttgcgctgctttgactgcatccgttcgtgtaggt cggcacgccagcgccgccagatttggccttaatttgcttgctcattggactcatactcgt cgagcagttgactctgctgatctagaaaacgtgcttcaacaagttgtacaaagtctgatc aagttaggggcgtcacaacaaatccgaggactaaaatcttggatgactgctcctaagcaa gcagatttttttcacctgataaacgtagacttcctcgaagcagctgctcttcaagctgac tcaaagtatgaaaaggcaattgaattttattcaaccaccgaagggcagccgacttccttt atttgcagccaggttatcgattcataccttgcgttgtcagattgggagggttttattaat tggaagagccaaactgttgaatggataaacaacgtaccccaatcgaaaaagcaaattgct gatttaatggaagcgtttgatcgtaatgcccatttacaatggccagaaaagtcctcacca gcactagaggtccaatggtcggtggaaaatttgatgagcgaagccaagagcgggctgtcc atggcagctgatcgaattcgagcttcacgctccgtgtacctagctcctgcctgttcctgg aagatcctggagactttggttggctccagtttggagctgtctaatttcgctatcgaagag agtgtggcaagtttgttaccactagctcatgctctatcgcacaagaatgattccgcgtac ctatggatgcaacacactcactcggtcctcaaaggtgctagctgtaccggattgaagtac tgttccagcaagaccggcgttgaatggtcacgttggcttcattggtattcctcattggac agacaggccgccgatatcactactgcttgtgccgagatggacctttccatcgtcccgcaa gctcgtcttgaaggaaacttgcgtctagctgagcgtcaactactgcggaccatgaacagc tcccaagttttggttcagtctcatgatatggccactcaactaatgaacgaagctctcaaa atgaatctaacttgtattagcagcacaagactggctatactaaggcaattcgaaggagca aaactacttcatcagaaaggcgagacagatgccgccatcagcgttcttacgcagtgttct ctagctttgtctcgttcactgcagggttctcaaaatgctgcagatgctattttgcctcat atggcagaatcttatacattgctggctaaatggcttcaacagagtttggagggcgcatca ccattgaaaaacattgcaactctgaaagagttggccaacgccggagcagtcgatcaagac cacgctgcattagtcagtaaattaatggagcgagcttcacagttctgtccgtcttcatct gaagcttggctagcgtggggtcaatatcagtattcaggagctcaacaacagacgcacatc aagtcactactaacaggcgttctatcggcagaagatattggtcgtttaagcgaaagcttt gatgaattgtcgggcgatgtcgaaaaagtattgacgtcggattcgattctgagcaaaaaa ccaactgtactgaagcgccttgtgtctgaagtgcagagtcgtcaagtttctgccgtcgag agctacagtggctccttaaaggcattctttcaatatctgaatcttcgaggatcaagcagc aatcaaagtcaccatagagatactgtggatgtgactcttcgaattttatgcatcttaagc cgacatctcgaccgtaaactagacagcactattgacggcgaattcattcaaactcttagt gatgcaaccgagcgtacaccttcaggagcttggcgttcaatcactccgcaattgttctct ttgatgcaacatggtcggccttggttgcgaactttggtttgtaatcttctcggtcgtttg gcgtccgagtggccacaattactcgtcttcccagttgcagttggtgccgctggattggct tggtcctggtcaactgacccgataaatttgaacgagtcgggcgacgaaccagatgaagcc aatgtcgaagaagcgaaaactgaattgtgtagtgcttctgaattgcagaccgtgtatcaa ggagtgatggatgagatgaaaatgcaagtacctgaaatggtgcaggacgtccggctgtta ttgaccgaacttcgtcgattggtgcttctatgggatgaactgtgggttgcggttttgcaa caaatgcatccgcaagtggaacagttgttgcataaattgcagtcacaagcacagaaatta aataaaaagactggattgaatgatgcggataaaaaggagctgctccaaaaacattttatc gtgctatttaaacctgttttgttggtgctcgaagctgtagccaaaatcaccaacctttcc ccacagacccctcacgaaaactggttcacccaacgatacagtaaaactatcaatgacggc atcgaaagttttaaagaaggatgtaattcagaacgtaccgtcgctgagctatggcttccg tttaagaacatgcttcaacaattgcaacatataaactatcgccgctctgttcttaaattg gacgatgtcagtccagctttaaaactgatgaaagatacaaaaatcccgatgcccggggtt aacgatagcaaacaagtacctactttgtttataaaatgtgtggagaatgtcatcattgtc ttacccaccaaaactaaaccaaagaaatttgttttcgttggcaccaatggcaaaaggtat gcgtacctatttaagggtatggaagacttgcatttggatcaacggataatgcaggtatta tcactgacaaatgtgctcctctccgactcgaaaaatcgttaccgtgctcgtcattacggc gtaattcctctgggacctcgctcgggactgattcaatgggttgagggtgttacaccactc tttgccctttacaaacgctggttgcagcgacaagctgccaacatcgtacaaggaaaagga gaaaaggacaacacagccacatccgttcctcgtccgtcggaactattttttaacaaactg acacctttgctggaagcagagggtctgagtgcggatccccgccagcgtaatcaatggccg atcgaaattctacgtcgagtgcaggcagaattgatggaagaaactccaaaagatctagtt gcacgagagttatgggctggtagtttgaacgctgagcagtggtggtcgtcaactttgcgc ttcggacaatcttgcgccgtaacttctgtgataggttacactattggactcggggatcgt catttggataacgttttggttgatttgcgctgcggagaggttgtccacatagattacaat gtttgtttcgaaaaaggtcgacaacttcgagttcctgaaaatgttccgtttagaatgacg gctaatatccaacatgcgttgggagttgccggaacaggattggaagggacatttcgctta tcgtgcattgatgtaatgaaaatgatgcgggaaaatcgagagctgttcaagattctgctg gaacattttgtatatgatccactcattgattggcgaaccccacttccatccacttcacat gaatcaacgcttattccactttatgtggtcaatccggctctagcagcacagtgttcaatc cagaaacgcattgccgagacagactctactttcaaactttttgagttacggatgtcggaa ctaggccctgattggtcattaaaccatgatgaaatggtatcaatcctctcttcgttgaaa gaatcttcttctgcttggggtgatatacatcaacaaattgaaaggttacaggaggaagtt caagaccttcatcaggatcgtcttgttctgtttgatgttcgttcagacaaaaatcatgtt atgcgccaaccgcaacaattatcgacgattcttcttcctctacgtactgcttgggaaggc gagaagagcgtgcgagccgctctaagaacactggttgaagacaattcgaagtggactcaa ctctacttgatggcattctcttctttgacatcgggacaactcaaacgatgggcagatgaa ataaattgtccttccctatcaaccgacaatcacgaaacaggatttccacttgcagtggag ttcttgaatacgtcaggacaaactgctttggcgcatcaaggccaattattagatcagcag gagtcggagttattcgataacttggaagacactcttatgggccaacgtctcatgttgatg atgtcgctctttcaaagctgctcagattggtcagagggatttcaaacgggccagatttct cgtgaactgcaacaggattcgtttgttgacaagtttcaaagaatggcgagcacttggatg gttcaatttctatccggtgcaacttctttctgcgttgttcgcctttgcatccatttggct gatgagtcaacgagtaccgaaaacggtccctcaacttccatcgaagatttaattgcaatt aaaagaagttcaatgaaatcgcaagacttgagtgaagagctccttgatgaggcctccgaa ctggtacattcaatcggtgagcagtggcgtaaatccgaactggtcaagttagcacaccaa cgacaagagattgatcagtctctagcccaattactacagcagcaattgtctgcccattca tggttacatgacacaaatgtgggcatcaattcaacgtgtggcctatttattcacaatttg aaacaatcactttcggttttattgtcgcaatcgcctcagttgacagaatttcaccaacaa gtgacgcaattggccactcaagtagagcagcgtctcaaatgggccgtgggggcgaattcc agtcttctcaaggttctcaatgaattcaccgaactccataacaaatgcctccagcggata cagtcactctcttcactggccactgccctggcaagtgtcagcagtgctattttgcattac gaatctttccgcacgagaactcccgaggcacttgccgtagactctacttttgttcaattg ctgtctcaatgtcaagacgtttgcttgttgaaggattgcggtaccaatggacgattgacc gacgctgaagtacgattggcccaacgtatcaatgtaggagaacaaggtgctactgaaaac tggattaaccagacagaaaaatatattactgataaaattctcgcatctaaagatcggatg aatgaactggtgtcgaaacaatctacacgagttgaagagttacatgagttgaacgccatc atgcgaagtcaattggccgttcaccatcaacttatatcggatgtgcgctccgtattgaaa atcatggctaaa

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