Daphnia pulex (common water flea): DAPPUDRAFT_243159
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Entry
DAPPUDRAFT_243159 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_243159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_243159
03016 Transfer RNA biogenesis [BR:
dpx03016
]
DAPPUDRAFT_243159
Enzymes [BR:
dpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DAPPUDRAFT_243159
Messenger RNA biogenesis [BR:
dpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAPPUDRAFT_243159
Transfer RNA biogenesis [BR:
dpx03016
]
Prokaryotic type
tRNA degradation factors
DAPPUDRAFT_243159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
EFX80827
JGI:
Dappu1_243159
UniProt:
E9GI57
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MIKFESSSHCLQFSGEDALISEGKKLVFQSGKYARFADGSAVASFGDTAVLVTAVSKAKS
SPASFLPLTVDYRQKAAAAGRIPTNFLRRELGTSEREILTSRMIDRSLRPLFPDGYFYET
QVVCNLLSVDGVNDPEVLSINAASAALAISDIPWNGPVAAVRVGFIDNEVVINPTRRELA
HSQLNLVVSSTFPNLVVMLEASAENVYQQDFLKAIRTGVKECQTIAKAIEKLREDAGKPK
REFTVLPSGSEELLSAVKLLSENRLRVILRDFNHDKISRDVAVATVRNDVMEKLRTSFPD
TDPMIISESFNKFFKEFFRQLILDEEIRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQ
TQVVCTVAFDSPESALKSDPVSILMGGLKAKNFFLHYEFPPYATNETGRVGSGGSAGRRE
LGHGALAEKGLRPVVPSDYPFTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAA
GVAVGLVSRVNPETKQIDDYRILTDLLGIEDYLGDMDFKLAGTKKGITALQADFKLPGVP
LKIIMESVVQASDAKSHILDIMAQTIKQPRNDKKDIWPLSEKLEIEAHKRPKFVGIGGSN
LKKLTAETGVQITSIDDLTFSIFAPNQSAMDEAKEMIEQFLKEEKEPELEFGAIYKARIV
EMKETGVLVTFYPKMVPTLLHNSQLDVRKVAHPSALGLQVGDEISIKYFGRDPVSGRMRL
SRKVLQSVASSVVKNLNGKPPSS
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtttgaaagtagtagtcattgtcttcagttttctggagaggacgctttaatt
tctgaggggaaaaaactggtatttcaatctgggaaatatgctcgattcgccgatggaagc
gccgtggcatccttcggagatactgccgtattggttacggctgtgagtaaagccaaaagc
tcaccagcttcattcctgcctcttacggttgactacagacagaaagccgctgcagcaggc
agaatacccaccaatttcttgaggagagaacttgggacatccgaaagagagatactgact
agtcgcatgattgaccgatcccttagaccactctttcctgatggttacttctatgaaact
caggttgtgtgcaacttgctgtctgtcgatggagtcaacgatccagaagtgctgagtatc
aatgctgcctctgctgcacttgccatctcagacattccttggaacggtcctgtggcagca
gttcgtgtgggtttcattgacaatgaagtggttatcaatcccacgagaagagagttggcc
cacagtcagttaaacttggtcgtcagttccactttccctaatttggtcgtcatgctggaa
gcttcagccgaaaatgtgtaccagcaagactttttgaaagccatcagaacgggagtgaaa
gaatgtcaaactatcgccaaggcaatcgaaaaattgcgcgaagatgccgggaaacccaaa
cgggagtttaccgtcttgccgtctggctcggaggagttgctatctgccgtcaaactattg
agcgaaaatcgattgcgggttattctgcgcgattttaatcacgacaagatttcgcgtgac
gttgcagttgccaccgtacgaaacgatgtcatggaaaaactaagaaccagctttcccgat
acggatccaatgattatcagcgaatcatttaataaatttttcaaggaattctttcgacag
cttattctagatgaagaaatcaggtgtgacgggaggaagttgactgacattcgtaacatt
tcttgtggtgttgacttgtataaaccactacacggatccgccatcttccaacgtggtcaa
actcaagttgtttgcactgtggccttcgattcaccggaatcagccttaaaatccgatcca
gtttccattcttatgggtggattgaaagccaagaatttcttcctccattacgaattcccg
ccttatgcaaccaacgaaacggggagggtaggatcaggtggtagcgccggtcgtcgtgag
cttggccacggagctttagctgagaaaggtctcagacctgtggtgcccagcgactatccc
tttaccatccgtttgacttctgaagtcttagagtctaatggttcttcgtcaatggcctcg
gtttgtggaggttctctggctctgatggacgctggagttccaattttgcagccggcagcg
ggagtggcggttggtttggtcagccgagtaaacccggaaactaaacagattgacgactat
cgcattctcaccgatcttctaggcattgaagactatttgggagacatggatttcaaatta
gccggaaccaaaaaaggcatcacggctctccaagcagatttcaaactacctggtgtacct
ttaaagataatcatggagtcggtggttcaggctagcgatgccaagtcgcacatccttgac
ataatggctcagacaatcaaacagccgcgtaatgacaagaaagatatctggccactctct
gaaaaactggaaattgaagctcacaaacgacccaaatttgtcggtattggcggttcgaac
ctcaagaaattaactgctgaaacaggagttcagattacctctatcgatgacttgacgttt
tcgattttcgcacccaatcaatcggcgatggacgaagccaaggaaatgatcgaacaattt
ctgaaggaagaaaaagagccggaactggaatttggcgccatctacaaagcgcgtatcgtc
gagatgaaggaaactggcgtgttggtgaccttctatcccaaaatggttcctacactcctt
cacaattcacaactggacgtacggaaagtagcccacccatctgccctgggacttcaggta
ggagatgaaatctctattaaatatttcggccgggatccagttagcggcaggatgcggttg
tcgcgtaaagtcctccagtcggttgcgtcctcagttgtgaaaaacctgaatggaaaaccc
ccaagtagttaa
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