Daphnia pulex (common water flea): DAPPUDRAFT_254414 Help Entry DAPPUDRAFT_254414 CDS       T04347                                  Name (GenBank) hypothetical protein   KO K14400   pre-mRNA cleavage complex 2 protein Pcf11 Organism dpx  Daphnia pulex (common water flea) Pathway dpx03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:dpx00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     DAPPUDRAFT_254414  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:dpx03021]     DAPPUDRAFT_254414    03019 Messenger RNA biogenesis [BR:dpx03019]     DAPPUDRAFT_254414 Transcription machinery [BR:dpx03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      DAPPUDRAFT_254414 Messenger RNA biogenesis [BR:dpx03019]  Eukaryotic type   mRNA processing factors    3' end processing     Pre-mRNA cleavage factor IIm (CFIIm)      DAPPUDRAFT_254414 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Pcf11_helical Pfc11_Clp1_ID Pcf11_C zf_PCFS4 Motif Other DBs NCBI-ProteinID:  EFX72456 JGI:  Dappu1_254414 UniProt:  E9H745 LinkDB All DBs Position Unknown AA seq 1532 aa AA seqDB search MFKLRQTWSDVFPPKKLYALDVRVKSIDPAWPVTAPLPTSIHLNPAFLPKEERVGYKPNS TKKSGSSNVSKPAKPAAKVVQQPVVTAPVPASDLCETEMRESLLKKQKELLELQQKKLEI ELLQTKARLQQQQIQLIQTVNQTPPDVVTGLPIPEETSAFFAPSPLAETILPLAPSSEVF SVPEPMELAMTPPDLNMEELIITQIPQPTQPPPISHSIGLNNRSSRSPEKKAEAKKEKKD RDKDRDKEPGRKKSRKDSGPDDGRPKAKDSVRARKGKEQQHPETVVVLDADPVKGTSGED EVVVVGGRVAPQLRNHPSLRDAAKAMPRIPKISQRHPSSTGTGPSAPQSRDPRLTMLKPS QGAGNTHILTKDEHKGLESVGGGKIGNALPSEDDIQLVAAFRNVRNNIGRSRHSHNKRPP SPGIQAERRKMDVMKKESVVEPKKRRTNRFDDLFGNEDIDLRKVPAAPVVPAAPGVVIPP PLSSRESPPRGAWPKRGLAVQRGRAGWSGRGGRGGRAGPREDEDREQDGSGSPRNMDFIL EQAKENHRNGVINDGEYSTIIRQVFQMSETKMIREVQRRESFPGPPGPPGPPGPLTHPSM EHDFRFQGRDMPPGGPGPYGLEPFGPEQDRGWNDPRRAGGYPCGPYPPGPPGPGRMQRFD MIQPPRGNLGPPGMGGPPVSSAFEVRPDEDMKNIPIDNVPREIRFYGDKAIILMASDDPR LLGFQTCVRRVVFDNILPVDCTVGNDYMDFHFDGQLHKIKIGAPTRELYECMFGGPPITV NLGGRPVQAMLEGPPPTVKIGTERRLDLLAGRVTMIIDAHSVIPVYLDLKSQHFEMDAKR FTLQFKDALRTAVIDGNPYSVDFGGLPMAIHLDGRKHFVRFSSLPRGVEPGRVLQPLTQS EENRRVLEEEKSASQTPPLGTVNIGELLSKLVATGLLPGSVPEAVKPPPIKEEIKKEETM RVVNLGDSESMKVRPNVAVSMLYSGMQCGSCGLRFPADQTVRYSTHLDWHFRQNRREKGA SKRPQSRKWYCSVSDWIQFEETEGSEEKRLNWFEAQAKEKSEKDGERNGEDLTPREESTS VAVGSAPEENKCFVCHEELDEFFHEESEEWHLKDAVRVEGITFHRLCYRDHLSNVETGAY SPSDAMDEYKSATEEEKSGNEEDKSASDNDDKQISCDEEKAIAETSDIKKEEIQNELVDM QESVPSESVDIPFAIKTEKLDIEPMEELLAQDGSLLPVVKNEPVDTEVPFEDVTCAPVVQ TELAVETSLPTSVKMESIEVVGSDYLLDTTIQEGGLTPYQHSETDFTNVCNEEIDKTEEE VNDAAILLDTLDVMNDNANLLVGVEKVNDNSNQLEGLDEVLSSVQESIETTELAEALEET NSPAPELPPRTDEEVESRDQLINGDTATILDPLISISQTLTVNSSLDGNVEMTNKQPAPA PQAGIKIKINLFNKASSTIPSTAQQVTPQISSQPDAGLTSCPANVPDNSSKLLIPTSDEN SLTYKPRLAGRKLTVLPLMTKGVETSGLCSIM NT seq 4599 nt NT seq  +upstreamnt  +downstreamnt atgtttaaactgcgccagacgtggtcggacgtgttcccacctaaaaaactttatgccttg gacgtccgagtcaaatcaatagatcctgcgtggcccgtcactgcaccgctgcccacaagt atccatctaaatccagcgttcttaccgaaggaggaacgcgtgggatataaacccaattca actaaaaagtccggttcaagcaatgtttcaaagcccgccaagccagcggctaaggtagta caacaaccagtagtcacagcacctgtgcctgctagtgacctttgtgaaacggaaatgcgc gaaagtctcctgaaaaaacaaaaggaactgcttgaactccagcaaaagaagctagaaatt gagttgctgcaaacgaaagctagactacagcaacaacagatacaactcattcaaacggtt aaccagacaccaccggatgtagttacaggactccccattccagaagagacttcagcattc tttgctccgagtccgttagctgaaactatcctgccgcttgcgccgtcatccgaagttttc tctgtcccagaaccgatggaattggccatgacgcctccagatttgaatatggaagagctc attataactcaaatccctcaacccactcaacccccacccatcagccattcgattggattg aacaatcgttccagccgatccccagaaaagaaagctgaggccaaaaaggagaaaaaggac agagacaaggatcgagataaggagcctggacgaaaaaaatcccgaaaagattccggtccg gacgatggtcgacccaaagccaaggattcagttcgcgctcgtaaaggcaaggaacaacaa catccagaaactgtggttgtgttagatgcagatcctgtcaagggtacgtctggtgaagac gaggtggttgtggttggcggacgtgttgctccgcaattaagaaatcatcccagcttaaga gatgcggccaaagccatgcctcggatccctaaaatcagccaacgccacccgtcctcgaca gggactggcccgtcagccccacaaagccgcgacccacgacttacgatgctcaaaccgagt cagggtgccggaaacacacatattctaactaaggatgagcacaaaggtcttgaaagtgtt ggtggtggtaaaatcggtaatgcacttccgtctgaggacgatatccaactcgtggctgcc ttccgaaacgttcggaataacatcggccgctcacgccacagtcacaacaaacgcccccct tcacctggaatccaagctgaaagacgtaagatggatgtcatgaagaaggaaagcgtcgtc gaacccaaaaagagaagaacaaaccgttttgacgatttgtttggcaacgaagacattgac ctgaggaaagtgcctgctgctccagttgttcctgcagctcctggtgtcgtcattccacct cctttatccagccgagaaagtccacctcgaggagcttggcccaagcgaggccttgctgtt caacgtggtcgagcagggtggtctggtcgaggaggacgtggtggacgtgctgggcctcga gaggacgaagatagggagcaagatggcagcgggtcacctcgcaacatggacttcattttg gaacaagccaaagagaatcatcgcaacggtgttatcaacgatggtgaatatagtacaatt attcgccaagtgttccaaatgtcggagacaaagatgattcgggaagttcagcgccgtgaa tcgtttcctggccctccaggcccaccaggcccaccaggtccacttacacaccctagcatg gaacatgactttcgtttccagggcagagacatgccaccaggaggtcccggtccttatggc cttgaaccttttggtcctgaacaagacagaggatggaacgatccacgtcgtgcaggtgga tatccatgcggaccatatccgccaggcccacctggcccaggccgtatgcaacgttttgat atgatccagccacctcgtggaaacctcggcccacctggtatgggcggacctccagtcagc tccgcttttgaggttcgaccagacgaagatatgaaaaacatcccaattgataatgttcct cgagaaattcgattttatggggacaaagctatcattttaatggcctctgatgacccacgt cttctgggcttccagacttgtgttcgacgcgtcgtatttgacaacatattacctgtggat tgtacggtcggcaatgattacatggatttccactttgatggacagcttcacaagattaaa atcggagctcctaccagagagctgtacgaatgcatgttcgggggtccgccaattacggtt aacttgggcggtagaccagtgcaagcgatgttggaaggtccaccgcctacagtaaaaatc ggtactgaacgtcgattggacctgttggctgggcgtgtgacgatgattatcgatgctcac agtgttatccctgtttacttggatctcaaatcacaacactttgaaatggatgcgaaacgt ttcactttgcaattcaaagacgcactgcgaacggccgtaattgacggaaatccatacagt gttgattttggtggactgccaatggctattcatcttgatggccggaagcactttgttcgt ttttcgtctctaccacgaggtgtcgaacccggtcgtgttttacagcctttgacacaaagt gaagaaaaccgaagggttcttgaagaagagaagagtgctagtcaaactcctcccctcggc acagtcaatattggcgaactcttgtccaagttggttgccaccggcttattacctggaagt gttcctgaagcagtcaaaccgccccccatcaaagaagaaatcaagaaggaagagactatg cgagttgttaatttgggtgattccgagagcatgaaagttcgacccaatgttgctgtttcg atgctgtatagtggcatgcaatgcggtagctgcggattacgatttcctgctgatcagaca gttcgctacagtactcatcttgattggcatttccgacaaaatagacgcgaaaagggtgcc tctaaacgaccgcaaagccgcaaatggtattgcagcgtttccgattggattcagtttgaa gaaacagagggatccgaagaaaagcggctaaattggtttgaagctcaagccaaagaaaag tcggagaaagacggggagcgtaatggcgaagacttgactcccagggaagagagcacttcg gttgcggtgggctccgctcccgaggagaacaaatgttttgtatgccacgaggaactggat gagtttttccatgaagaaagcgaagaatggcatttgaaagacgcagttcgtgttgaaggg ataaccttccatcgtttatgctaccgcgaccatctttccaacgtggaaacgggtgcgtat tctccctccgacgcgatggatgagtacaaatcggctaccgaagaagaaaaatctggtaac gaagaagacaaatctgcctcggataatgacgacaaacagatttcatgcgatgaagaaaaa gctatcgcagaaacaagtgatattaaaaaagaagagattcaaaatgaacttgtggatatg caagaatctgttccatcggagagcgtggatatacctttcgccatcaaaactgaaaaactc gacattgaaccaatggaagaattgcttgcacaagacggatctttgttgcccgttgtcaaa aatgaacctgttgacacagaggtgccattcgaagatgttacttgtgcgcctgtcgttcaa actgagcttgctgttgaaacgagtttgccgacaagtgttaaaatggaatcgatcgaagta gtgggaagtgattatttgctcgatacaaccattcaggaaggtggtctaacgccctaccag catagcgagacagacttcacgaatgtgtgtaatgaagaaatcgacaaaacagaggaagag gtaaacgacgccgcaattctgctcgatactttggatgtgatgaacgacaacgcaaatctt cttgttggtgtggaaaaagtaaatgacaacagtaaccaacttgaaggtctggacgaagtt ctttcgagtgttcaggaatcgatagaaactactgaactcgccgaagctttggaagaaaca aattctccagctccagaacttcctccccgaactgacgaagaagttgaaagtcgcgaccag cttattaacggggacactgctacgattctcgatcctttaatttccatttctcagactctt actgtgaattcttcgcttgatggcaatgttgaaatgaccaacaaacagcctgctcctgct cctcaagctggaatcaaaatcaagattaatcttttcaacaaggcgtcgtcaactattcca tccactgcacagcaggttacgccccaaatatcctcacagcccgatgcgggcttgacttct tgtcctgcaaatgtcccagataacagtagtaaactgttaattcctacttctgacgaaaat tctttgacttacaagccgaggttggctggccgaaaattaactgttctccctctcatgact aaaggtgtcgaaacctctggactttgttccatcatgtaa

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