KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_300247
Entry
DAPPUDRAFT_300247 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DAPPUDRAFT_300247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpx03019]
    DAPPUDRAFT_300247
   03036 Chromosome and associated proteins [BR:dpx03036]
    DAPPUDRAFT_300247
Messenger RNA biogenesis [BR:dpx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     DAPPUDRAFT_300247
Chromosome and associated proteins [BR:dpx03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     DAPPUDRAFT_300247
    COMPASS/SET1 complex (yeast)
     DAPPUDRAFT_300247
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR55 ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_EIPR1 WD40_RFWD3 RMC1_N Beta-prop_NUP159_NUP214 Beta-prop_Vps41 MIOS_WD40 Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_HPS5 Beta-prop_IFT140_1st DUF6731
Other DBs
NCBI-ProteinID: EFX85234
JGI: Dappu1_300247
UniProt: E9G5N4
LinkDB
Position
Unknown
AA seq 320 aa
MHIKGEMKLTEPVVRSFRVAKVFKENTDRINNIDFSPTGDTLISSSEDDQIVIYDCEKGT
QKRTVNSKKYGVDLVHFTHAKNTAIHASTKVDDTIRYLSLHDNKYIRYFPGHTKKVVALS
MSPVDDMFLSGSLDKTLRLWDLRSPNCQGLMHLTSRPVAAFDPEGLIFAAGVNSESVKLY
DLRSFDKGPFASFRLNTEKTCEWTGLKFSPDGKTILLSTNSSIIRLVDAFHGNPTHTLTG
HLNDKKIPLEASFSPDSQFVFSGSTDGRVHVWHAESGHKICVFNADHNGPVQCIQFNPKY
MMLASGCNNMAFWLPSEDNS
NT seq 963 nt   +upstreamnt  +downstreamnt
atgcacattaaaggcgagatgaaactgactgagccagttgttcgaagtttcagggtcgca
aaagtttttaaggagaacacagatcggatcaataacattgacttttctcctacgggagat
acgcttatttcgagtagtgaagatgatcaaattgtaatatacgactgcgaaaagggaacc
caaaaacggacagtaaatagcaaaaagtatggtgttgacctagtacacttcactcatgcc
aaaaatacggctatccatgcatcaacaaaagttgatgacactatcagatatttatcattg
catgacaataagtacattaggtatttccccggacacactaaaaaggtagtagcattgtca
atgtctcctgtggatgacatgtttctgtctggttcactggacaaaaccttgagattatgg
gatcttcggtccccaaactgtcaggggctaatgcatttaacaagtagacctgttgcagca
tttgatccagaaggactcatttttgctgctggagttaattcagagagtgtgaaactctat
gaccttaggtcatttgacaagggtccctttgcttcgttccggcttaatacagagaaaact
tgcgaatggactggattaaaattcagtccagatggcaaaacaatccttctttcgaccaac
agtagtatcattcgacttgtagatgctttccacggcaacccaacccacacattgacgggt
catcttaacgataagaaaattccactcgaagcgtcattcagtcccgattcccagtttgta
ttcagcggttcaacggacggccgagttcacgtttggcatgctgaatcgggtcataagata
tgcgtttttaatgctgatcacaacggcccagtgcagtgtattcagttcaatcccaagtat
atgatgcttgcctctggatgcaacaacatggccttttggcttccttcggaggacaattca
taa

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