KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_301602
Entry
DAPPUDRAFT_301602 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03013  Nucleocytoplasmic transport
dpx03015  mRNA surveillance pathway
dpx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DAPPUDRAFT_301602
  09122 Translation
   03013 Nucleocytoplasmic transport
    DAPPUDRAFT_301602
   03015 mRNA surveillance pathway
    DAPPUDRAFT_301602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpx03019]
    DAPPUDRAFT_301602
   03041 Spliceosome [BR:dpx03041]
    DAPPUDRAFT_301602
Messenger RNA biogenesis [BR:dpx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     DAPPUDRAFT_301602
    TREX complex
     DAPPUDRAFT_301602
Spliceosome [BR:dpx03041]
 Complex C
  Other components
   EJC/TREX
    DAPPUDRAFT_301602
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    DAPPUDRAFT_301602
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-ProteinID: EFX83713
JGI: Dappu1_301602
UniProt: E9GAA9
LinkDB
Position
Unknown
AA seq 250 aa
MGDKVDMSLDDIIKTNRSAGRGRGGRGGRGGSSRGGNRNAGSGPVRNQRQGNAGGRAAPY
AKGNPDGDWSHDMYEGGPRKSNPRLGAAPNAAGGGSSKLVVSNLDFGVSDADIKELFMEF
GPLKHASVHYDRSGRSLGTADVVFERRLDAVKAMKQYNGVPLDGRSMVIQMATSDLNTIA
NRLTSPRANTNNGPQQKRTGAPASNRGQRGGGQRGQRGGAGGARQRNPKQPAPTADELDA
ELESYRSELK
NT seq 753 nt   +upstreamnt  +downstreamnt
atgggcgacaaagttgacatgagcttggatgatatcatcaaaactaaccgttcagccggc
cggggccgtggaggacgcggcggtcgaggtggcagttctcgtggaggcaaccgtaatgcc
ggctcaggacccgttcgtaatcaaagacagggaaatgctggaggtcgtgctgcgccttac
gcaaagggcaacccagatggtgactggtctcatgacatgtatgaaggtggaccaaggaaa
agcaatcccaggcttggtgctgcaccgaatgctgctggaggcggctcttccaaacttgtt
gtttctaacttagactttggtgtgtcagatgcagacattaaggaactttttatggaattt
ggaccattgaaacatgcttctgtgcattatgacagatcaggcagatctctcggtacagct
gatgttgtgtttgagcgccgtcttgatgctgtcaaggcaatgaaacagtacaacggagtc
ccattggatggtcgatcaatggtcattcagatggctacatccgatttgaacacaatcgcc
aaccgactgaccagccctcgagctaacactaacaacggaccgcaacaaaagaggactggt
gcgccagcttccaacagaggccagagaggaggaggccagcgtggtcagcgaggtggtgct
ggtggcgctcgccaacgcaatcccaaacagcctgcaccgacagcagatgagctcgatgcc
gagttggagtcatacaggagtgaattgaaataa

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