Daphnia pulex (common water flea): DAPPUDRAFT_303932
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Entry
DAPPUDRAFT_303932 CDS
T04347
Name
(GenBank) putative MSH6, mismatch repair ATPase
KO
K08737
DNA mismatch repair protein MSH6
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DAPPUDRAFT_303932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_303932
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
DAPPUDRAFT_303932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
MUM1-like_PWWP
AAA_29
Motif
Other DBs
NCBI-ProteinID:
EFX80747
JGI:
Dappu1_303932
UniProt:
E9GIJ2
LinkDB
All DBs
Position
Unknown
AA seq
1310 aa
AA seq
DB search
MSKSSQKNTIFNYFVKSPTAAGSTTPSRNTNAASASSPTFASPSTKTTPSRAALTPSNKD
TPKLKIKRGLSQTPIPQKEGYELGSLVWAKLDGFPWWPSVVCLHPVKKVEKEGGKIHVQF
FDNPPTRSWIHMKFARPYTGSQNFNSLGVSKPKDSDWDNGCKEADNALPMSVEERLKLVV
ELLPSDEENSISEESTPKTTTKTSKKTEGPKPKRRRILVPGDSDEDEASEEEYKPMAVDS
SESEVEESLIEEDQENPISEEEVEEESPVKRKRKLPVGYTKSALNTPSNLKSFVCDSPST
ISNSTKKKLSDFSCRDADGAVCDSQSEGRQFSHLTYEFLKPANIRDGQRRRPDDPDYDPR
SIYIPDSFKQSLTPAMRQWWEMKTNNFDVILFFKVGKFYELYHTDALIAVKELGIILMKG
DHAHCGFPERGFAKYSSQLIEKGYKVARVEQTETPEMMTERCKRMSRPTKFDRVVEREVC
QITSRGTRTYNAIEGDNWQVEHHFLMALWEKSGSEAAGGKVEFGVAFVDTSIGSFQLGQF
GDDRYRSRLSTLLTRYNPVEIISAKRGVSNDTTQVWNAACPNALHEMVSSNAECWDPAKT
LRSLAESDYFKVNGDLDWPEGIRPLLDDSSSLGLAAKEESELAIRALGALHWYLKECKLD
QELLSRRSFQIYYPIDEESQENAIFGSHMVLDGMTLRNLDVLVNSSTGTTTGSLLERLNR
CNTAFGQRMLRHWLCAPLCQQDAIDDRLDAVEYLLSNTAAIEEVGKILKSLPDLERLVNK
IHSQGSSLKAKNHPDSRAIFFDAPIYSKKKITDFLLTLEGFRSAQKVEEYFREYTIISKL
LRQSVKLASQGGEFPDMDEELEFFRLAFDHQQAAKEGTMVPRPGVDKQYDQALERIAEVQ
ADAEKYLLDQKRHFGGKVSFVGTDKKRFQLEVSEAAASRANHKYELQGQRKGFKRYYTNE
SRVLIQQMLAAEEQRNSALKDISRRIFEQFDNHHLLWEKAIKCLAVLDVVLALTAFAADQ
KVCRPRIIPPGSNQRPFLRLIQGRHPAHSQQFANSEFIPNDVTIGSGVVEQSDSQVDADH
SLTLVTGPNMGGKSTLMRQVGLCVILAQMGSFVPAEEFELTPVDRLFTRLGANDHILGGE
STFFVELSETAAILKHATLHSLVLLDELGRGTATFDGTAIAYSVVDHLARRQCRTLFSTH
YHSLVHDLTSHPQVRLGHMACMVENDEEVDDPSQENIIFLYQFVDGACPKSYGFHAARLA
GLERSIISRGFQQAKRMESKMLSVQLFRDLFEKQTPKLPVDFQPNWNCLL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagtcatcccagaaaaatacaatattcaattacttcgtgaaatctcctactgct
gctgggagcactactccttcacgaaacactaatgctgcatcagcttcttctccaacattt
gcgagcccttcaacaaaaacgacacctagtcgtgcagccttgactccttccaataaggat
acacctaagctgaagattaaacgagggttgtcccaaactcctataccacaaaaagaaggt
tatgagcttggcagtcttgtttgggcaaaacttgacggttttccatggtggcccagcgtt
gtatgtctccatcctgtaaagaaagtagaaaaagaaggtggaaagatacatgtacagttt
tttgacaatccacccacaagatcgtggattcacatgaaatttgcaagaccttatacagga
agccaaaatttcaactcacttggtgttagtaaacctaaagacagtgattgggataatgga
tgtaaagaagcagacaatgctcttccaatgtctgtagaagagagattgaaattagtagtt
gagctacttccatctgatgaagagaacagcataagtgaggagtctacaccaaaaactact
actaaaacatctaagaaaactgaaggacccaaacccaagagaagaagaattttggttcca
ggtgacagcgatgaagatgaagcttcagaagaagaatacaagccaatggctgttgacagc
agtgagtctgaagttgaagagagtctaattgaagaagatcaagaaaatcctatttcagag
gaagaagtggaggaggagagtcccgtgaaaaggaaacgtaaattaccagttggatatacg
aaaagtgctttaaacaccccatctaatttgaagtcattcgtctgtgattcaccttcaacc
atcagtaatagtaccaaaaagaagctgtccgactttagttgcagagatgctgatggtgca
gtctgtgatagtcaaagtgaaggacgacaattctcacatctgacttacgaatttttgaag
ccagctaatattcgtgatggtcaaaggcgccgtccagatgatcctgattatgacccgaga
tctatatacattcccgattcgttcaaacaaagtctaactccagctatgcgccagtggtgg
gaaatgaaaaccaacaattttgatgtcatcctcttctttaaagttggcaaattttatgag
ctgtatcacacagatgccctgatcgctgtcaaagagttgggtattatcttgatgaaagga
gatcacgctcactgtggatttcctgaacgaggcttcgctaagtactcctcccaactaatc
gaaaagggttacaaagtagctcgggtggaacagacagaaacaccagagatgatgacggaa
cgatgcaagcgaatgtctcgtcccactaaatttgaccgagtcgtagagcgtgaagtatgc
cagattacgtcacgtggaactcgaacctacaacgcgattgaaggagacaactggcaggtt
gaacaccatttcttaatggcgctgtgggaaaagagtggatcggaggcagctggtggaaaa
gtcgaatttggtgtggcattcgttgatacatcaattggtagttttcaactaggccagttt
ggagacgatcgctatcgttcccgtctttcgacgttgctaacccgttataatcctgtggaa
atcatctcagccaagcgcggagtctcaaacgatactacccaggtgtggaacgctgcctgc
cctaatgctcttcatgagatggtcagctccaacgccgagtgctgggatccagcgaaaact
ctccgctctctagccgaaagtgattactttaaagtgaatggagaccttgattggccggaa
ggcattcgcccgttgctcgatgacagcagtagccttggcttggctgccaaagaggagtct
gaactcgccattcgagcattgggagcccttcattggtatctgaaagaatgtaaactggac
caagaactgttatctcgccgttcattccaaatttactatccgattgatgaagagtcacaa
gaaaatgccatttttggttcccacatggtgctggatgggatgacattacgcaacttggac
gttctagtaaactcttccacgggtaccacaacaggatctttattggagcgactcaaccgc
tgcaacacagcgtttggccaacggatgcttcgtcattggctatgcgcaccactgtgtcaa
caggatgccatcgacgatcgactggacgcagtcgagtatcttttgagcaacacagcagca
atagaagaggttggaaaaattctaaagtctcttccggatttggaacgattagtgaacaaa
atccacagtcaaggcagttccctcaaagctaaaaatcatcccgacagccgcgctattttc
tttgatgctcctatttacagcaagaaaaaaataaccgactttttactcacattggaaggc
ttccggtcggcccaaaaagttgaagaatactttcgcgaatacaccattatttcgaagctg
ctcaggcaatcggtgaagctagcgagtcaaggcggggaatttcctgatatggacgaagaa
ctggagtttttccgcctcgcttttgatcatcaacaagctgccaaggaaggcacgatggtt
cctcgaccaggtgttgacaagcaatacgatcaggccttggagcggatagccgaggttcaa
gcagacgccgagaagtatctacttgatcaaaagcgtcactttggaggaaaagtatcattt
gttggtaccgacaagaagcgttttcaactggaagtttctgaagcagctgccagtcgtgcg
aatcacaaatatgaattacaaggtcagcgcaaaggattcaaacgatactacactaacgaa
tctcgtgttttgattcaacaaatgttggcggctgaagaacagcgaaattcggccctcaag
gatatcagtcgacgaattttcgagcagtttgataatcaccatttgctgtgggagaaagca
atcaagtgtttggctgttctagatgttgtcttggctctcacggctttcgctgctgaccag
aaagtctgccgccctcgtatcattcctcccggaagcaaccagcgtccctttttgcggctg
atccaaggacgccatccagcccactcccaacagtttgccaacagcgagttcattccaaac
gacgtcaccattggatcgggcgttgtggaacaatccgattcccaggtcgatgccgatcat
tcgctcacattagtgacgggcccaaatatgggtggtaaatcgacgttgatgcgtcaagtt
ggactttgcgtcattctggctcaaatgggatcatttgtccctgctgaagaatttgagctg
actccagtggacagactctttacgcgtttgggagccaacgaccacatcttgggtggagaa
agtaccttctttgttgaactgagtgaaactgctgcgatcctgaagcatgcaacgctacat
tcgcttgtcttgctggatgagcttggaagaggcactgctaccttcgatggaacagctatt
gcatattctgttgtggatcacttggctcgccgtcaatgtcgcactttattttctactcat
tatcacagcttggtccacgaccttacttctcaccctcaagttcgtttaggccatatggcg
tgtatggtggaaaatgacgaagaagtggacgaccctagccaagaaaacataatttttctt
taccagtttgttgatggagcttgtcccaagtcttatggattccacgcggcacgactggct
ggacttgagaggagcatcatttcacgcggcttccaacaggcgaaacgtatggaatcaaaa
atgttgtctgttcaattgtttcgtgatctgttcgaaaaacaaactcctaagttacctgtc
gatttccagccgaattggaattgtcttttgtaa
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