Daphnia pulex (common water flea): DAPPUDRAFT_304340
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Entry
DAPPUDRAFT_304340 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_304340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_304340
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_304340
03009 Ribosome biogenesis [BR:
dpx03009
]
DAPPUDRAFT_304340
03016 Transfer RNA biogenesis [BR:
dpx03016
]
DAPPUDRAFT_304340
Enzymes [BR:
dpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DAPPUDRAFT_304340
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
DAPPUDRAFT_304340
Spliceosome [BR:
dpx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DAPPUDRAFT_304340
Complex C
U4/U6.U5 tri-SnRNP related factors
DAPPUDRAFT_304340
Ribosome biogenesis [BR:
dpx03009
]
Eukaryotic type
Pre-60S particles
Helicases
DAPPUDRAFT_304340
Transfer RNA biogenesis [BR:
dpx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
DAPPUDRAFT_304340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
DUF7785
Motif
Other DBs
NCBI-ProteinID:
EFX79897
JGI:
Dappu1_304340
UniProt:
E9GKW3
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MENIDDLFSVFSEESTVTKPLIGTKKNVTKPETSESTEKPSSSGLKRHINKNDNNDDAPQ
AKTSKMETDEDENVDEKLLMSGPRIAIHTLDTIEQCTHEVAVPPDADYAPLRPYSGPPAK
EYPFVLDPFQKEAILCLQNSQSVLVSAHTSAGKTVVAEYAIAMSLKEKQRVIYTTPIKAL
SNQKYREFSEEFKDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVVREVAWVVFDEI
HYMRDKERGVVWEETIILLPDNVHFVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPV
PLQHYIFPGGEGIHLVVDEKGQFREDNFNEAMAVLHTVGDAASGDKRGRRGGIKGGEAGS
SCFKIIKMIMEKNFSPVVVFSFSKKECEFYALQMSKLDFNSNEEKKLVGEVFQNAMEVLS
EEDRKLPQVEQVLPLLKRGIGIHHGGLLPILKETVEILFAEGLIKALFATETFAMGLNMP
ARTVFFTNARKFDGKENRWISSGEYIQMSGRAGRRGLDEKGIVILMIDEKMSPAVGRNLV
KGQADLLNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQQYAAIPHLVENVRQKEKDF
KKFSVPQEEDVSSYYTIRQQLANLNEGLHKYLVKPQYIVPFLQAGRMVHIKNKGDDFGWG
IIVDYKKENLVGKGEDSKNKDLDSSYVVSVLMYISKASTESKVVSALKPCGPKEEGEMRV
VPCFLNLITKISSVRLYFNEDLRPLDNRMEVYKRIQEVHRRFPQGVPLLDPVKDMHIKDK
DFVEMVQRSRAFEERLTAHQLHRDTKVETLCQLYHDKQGLAAQLKHAKDELKKAKSLLQM
TELKCRKRVLRRLGYCTAADVIELKGRVACELSSGDELLLTEMIFNGLFNALDVTQTAAL
LSCFVCDEKSNEMPKLSEALSGPLKQMQDLARRIAKVSVEAKLELEEDEYVEKFKPYMMD
LVAAWCRGSSFGDICKMTDLFEGSIIRCMRRLEELLRQMVQASKSIGNTELENKFSEGIK
LIKRDIIFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattgacgatctcttcagcgtttttagtgaggaatctactgtaacaaaaccg
ttaattggaactaaaaagaatgtcacgaagccagaaacaagtgaatccactgagaagccc
tcatctagtggtctcaagcgtcacatcaacaaaaatgacaataatgatgatgctcctcaa
gcaaaaacttccaaaatggagactgacgaagatgaaaatgtagatgaaaaactactgatg
tcaggaccaagaatagccattcacacacttgataccatagaacaatgcacccatgaagtt
gctgttccacctgatgctgactatgctccattgcggccatactctgggcctccagccaag
gaatatccatttgttttagatccatttcagaaagaagctattctctgtttgcagaattca
caatcagtcctggtgtcagcccacacatcagctggcaaaactgttgttgccgaatatgcc
attgctatgtcgttgaaagagaaacaacgtgttatttacacaactcccatcaaagcttta
agtaatcagaagtacagagaattttctgaagaattcaaagatgtaggtttaatgactgga
gatgttactatcaacccaacagcctcttgtttaattatgaccactgagattttaaggagt
atgttgtatcgtggctcagaagtcgtgcgtgaggtggcatgggtggtttttgacgaaatt
cattacatgagagacaaggagcgtggtgtcgtctgggaagagacaattattctactaccg
gacaatgttcatttcgtctttctctcggctacgatcccaaatgcacggcagtttgccgaa
tggatttgtcatttgcacaaacagccatgccatgttgtgtacaccgattatcgaccagtt
ccgctccagcactacattttccctggcggagaaggtattcatctcgttgtagacgaaaag
gggcaatttcgagaagataactttaatgaagcaatggcagttcttcacacggttggagat
gctgcatctggcgataaacgtggtcgacgtggtggaattaaaggtggtgaagccggttcc
agctgcttcaaaattatcaaaatgattatggagaagaacttttcacctgtcgttgttttc
agctttagcaaaaaagaatgcgaattttacgcattacaaatgtcaaaattggatttcaat
tcaaatgaagagaaaaagttagtgggtgaagtttttcaaaatgccatggaagtattgtcg
gaagaagacaggaaattaccacaagtggaacaggtcctgcctcttttgaaaagaggaatt
ggtattcatcacggaggtctactaccgattttgaaggaaaccgtagaaatcctttttgct
gaagggcttatcaaagccctattcgcaaccgagacgtttgctatgggtctcaacatgcct
gctcgcactgttttcttcaccaacgcccgcaaattcgatggcaaagaaaatagatggatt
tcatctggagaatacattcaaatgtctggtcgtgctggtcgacgtggtctcgacgagaaa
ggtatcgttatcctgatgatagacgaaaaaatgagccctgcagtcggtcgcaatttggtg
aagggccaagcagatcttctcaactcggcattccatctaacatacaacatggttctcaac
ttgttgcgcgtagaagaaatcaatccagagtacatgctggagcgttcgtttttccagttc
cagcaatatgctgccatcccgcatttggtagagaatgtaagacagaaggaaaaggatttc
aaaaaattctctgttcctcaagaagaggatgtttcttcctattacacaatccgacagcaa
ctggccaacttgaacgaaggtctccataaatatttagtgaaacctcagtacatcgttcct
ttcttgcaagccgggcgtatggttcacatcaaaaataagggtgacgactttggctgggga
atcattgtcgattacaagaaagaaaatttagtaggaaaaggagaagacagtaaaaataag
gatttggatagttcttatgtcgtcagtgtccttatgtacatctccaaagccagcacagag
agtaaagtagtttctgcattgaaaccttgtgggcccaaagaagagggagaaatgcgagtc
gtgccttgtttccttaatcttatcacaaagatcagttctgtccgtctctatttcaatgaa
gatcttcgcccactcgacaaccgtatggaagtctacaaaaggatccaggaggttcacaga
cgtttcccacaaggtgttcctctcctcgaccctgttaaggacatgcacattaaagacaaa
gattttgtagagatggttcagcgatcacgagcttttgaggagcgtttgacagcccaccaa
cttcatcgcgataccaaagtcgagaccctgtgccaactctaccacgacaaacaagggttg
gctgctcaactgaaacacgccaaagacgagttaaagaaagccaaatcccttttgcaaatg
acggagctgaaatgccgcaaaagagtattacgccgtctcggctactgcactgcggctgac
gttattgaattgaaaggtcgcgtggcttgcgaattgtctagcggcgatgagctgttgcta
accgaaatgatattcaacggactgttcaatgcactcgatgtgactcaaacagctgcgcta
ctcagctgcttcgtctgcgatgaaaaatccaacgagatgcccaaactttccgaagcatta
tcaggtcctctgaagcagatgcaggatctagcccgaaggatcgccaaggtgtcagttgag
gctaaactggaactggaggaagacgagtatgtagagaaattcaagccttacatgatggac
ctggtcgctgcctggtgtcgtgggtcttcattcggtgacatttgcaaaatgactgatctc
ttcgaaggaagcatcattcgttgtatgaggcggttagaagaattacttcgtcaaatggtg
caagcatctaaaagtataggaaataccgagttggagaacaagttcagcgaaggtatcaag
ctcatcaaacgtgacatcatcttcgctgccagtctatatctttga
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integrated database retrieval system
