Daphnia pulex (common water flea): DAPPUDRAFT_304478 Help Entry DAPPUDRAFT_304478 CDS       T04347                                  Name (GenBank) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism dpx  Daphnia pulex (common water flea) Pathway dpx03020   RNA polymerase dpx03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:dpx00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     DAPPUDRAFT_304478   09124 Replication and repair    03420 Nucleotide excision repair     DAPPUDRAFT_304478  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:dpx03021]     DAPPUDRAFT_304478    03400 DNA repair and recombination proteins [BR:dpx03400]     DAPPUDRAFT_304478 Enzymes [BR:dpx01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      DAPPUDRAFT_304478 Transcription machinery [BR:dpx03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      DAPPUDRAFT_304478 DNA repair and recombination proteins [BR:dpx03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       DAPPUDRAFT_304478 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_6 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 DUF3137 Motif Other DBs NCBI-ProteinID:  EFX79678 JGI:  Dappu1_304478 UniProt:  E9GLJ8 LinkDB All DBs Position Unknown AA seq 1441 aa AA seqDB search MYFVGSETKPTIRVVKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQG VTNRSARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNN PKLQEIFLKSEDQPGKRMALVHELCKGKNICEGGDQIGEDEPITEDMVGHGGCGRSQPSI SNRQLEIIAKWKNLDIVSGAKKLVLTAEHVLAIFKRISDEECAILGMDPKYARPEWMIIS CLPVPPPNTRPPVMNGSEHDYLTRKLVDIVKVNNELQRNEQSGAEDPIIANNIKMLQFNI AMLSNSIKNRLEGKKGRIRGNLMGKLVDFSARTVITPDPNLRIDQVGVPRIIAQNMTFPE IVTSFNIEKMQELVQRGEAKYLIRENGDRFDLKYVKKNPVLELGDKLERNIRDGDLVVLN RQPALRKEHMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNLHVPQSMETRAEAEQIL ITSRLIITPQANKPVMGIVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPKPAI LKPRPQWTGKQLFTLIIPGNVNMMITHSTHPDDEDEGPYKWISPGDTKVMVENGELVMGI LCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDMLGDRPTY MDIQATIQNAKEDVIEVIQKSRNDELEPTPGNTLRQTLENQVNRILIDARNETGGSAKNS LTEFNNLKAMVVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPES RGFGSGLTPSEFYFHAMDRKALIDTAVKTANTGYIQRSLIKAMESVMVHYDGTVRNSAGR ILQFSYGGDGLSAESVELQKMPTVNLSNEAFEKKFKFDPSNENYVRRIFNEEITRELISS AEVITEIEHEWEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLS PLRVIQGVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAF EWLIGEIATRFQQAQAQPGEMVGALAAQSLGEPATKMTVNTFHFAGVSSKNVTLGVARLK EIINISKSPKSPSMTVFLRGEAATDAEKAREVLCRLEHTTLRKVTANTAIYYDPDPLNTV ILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKRMTDKRLTMEQIAEKVYTMFGNAVKC MFSDDNAEKLVLRIQILSVDDVNEEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGIESIGK VYMHWPQTDQKKRIVVTETGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIM DVLGIEAARKSIKRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPINSIDRQDTGALM KCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAIVKTS S NT seq 4326 nt NT seq  +upstreamnt  +downstreamnt atgtattttgttggctcggaaaccaaaccaaccatccgggttgtgaaaaaagttcaactt ggtatcttgagtccagatgaaataagaaagcaatctgtcacagcaggtggcataaaatat cctgagatttatgaaggtggcaagcctaaattgggtgggatcatggatcccagacaggga gtcacaaatcgatcagcaaggtgccagacttgtgacggaaacatgaatgaatgcccagga cattttggtcacatcgatctggccaaaccagtcttccatgttggattctttgagaaaaca atagaaatccttcgctgtgtgtgttattattgctcaaaacttctggtgagcccaaacaat cctaaacttcaggagatttttctgaaatccgaagaccaacctggaaaacgtatggccctt gttcatgaactctgcaaaggcaaaaacatttgtgaaggtggtgaccaaattggcgaagat gaacccataacagaagatatggttggccatggtgggtgtggtagatctcaaccttcaata tccaatcgtcaactcgagatcattgccaaatggaaaaacctcgatatagtgtctggtgcc aagaaactagttctgacagccgaacacgttcttgccattttcaaacgtatttctgacgaa gaatgtgcaatcctcggtatggatcctaaatatgctcgtccagaatggatgatcatcagt tgcttgcctgtgcctcctcctaacactcgacctcctgttatgaatgggtcagaacatgac tatctcacacgaaaacttgtcgatatcgttaaagttaacaatgaactgcaacgcaacgaa cagtctggcgctgaagatcccatcatcgctaataatattaaaatgcttcagtttaacatt gccatgttaagtaactcaataaaaaaccgcctagaaggcaagaaaggacgcattcgaggt aacttgatgggaaagcttgttgacttttcggctcgtaccgtaattacgcctgacccaaat ctgcgtatcgaccaagttggcgtaccgcgaatcatagctcaaaacatgaccttccctgaa atcgtcacttcattcaacattgaaaagatgcaagaattggtccagcgaggtgaagcgaaa tacctgatccgagaaaacggcgaccgatttgacctaaagtatgttaagaagaaccctgtt cttgagttaggggacaagttagaaagaaacatccgagatggcgatctcgtcgttctcaat cggcaacctgcgttgcggaaagagcatatgatgggacatcgtgttaaagtgctcccatgg cccagcatccgcttgaatccaagctgtgcatctccctacaacgccaattttgacggtgat gagatgaacttacacgttcctcaaagtatggagacgcgtgctgaagctgaacaaattctc atcacctcacgtctgatcatcacaccccaggccaataaacctgtcatgggtatcgtgcaa gacacccttgtcggtgcttataaactgacaaagcgcgacgtgttcctcgagaaagagcag atgatgaatttactcatgtttctccccacttgggatggcaaaatgccaaaaccagccatt ctcaaaccgagacctcagtggacaggcaagcagctgttcactctcatcattcctggaaac gtcaacatgatgatcacgcattctacccatcctgatgatgaagacgaagggccctacaag tggatctctcctggtgacaccaaagtcatggttgaaaacggcgagttggtcatgggcatc ctatgtaaaaagacgctcggtgcctctgctgcctctctgctgcacattattttcatggaa ttgggtcacgaagtatgcggtcgattctacggcaacattcaaacggtcatcaacaactgg ttactgtacgagggtcacagcatcggcattggagacatgttaggtgatcgtccaacgtat atggacattcaggccaccattcaaaatgctaaagaagacgtgatagaggtcattcaaaag tctcgcaatgatgagcttgaacccacacctggtaacactctacggcagactttggaaaat caagtaaatcgtatcctcatcgacgcccgaaacgaaactggtggttcagctaagaactct ttgacagagttcaataacctcaaggccatggtggtagctggttccagtggttccaatgtt aacatctctcaggtcatcgcctgcgtcggtcagcagaacgtcgagggtaaacgaattccc tttggattccgcaagaggactttgccccacttcatcaaagacgatttcggtcccgagtct agaggtttcggttcaggtttaacaccttccgagttttacttccacgccatggatcgaaaa gctctcatcgacacagccgtcaagacagccaacactggttacattcagcgaagtctcatc aaagccatggagtctgtgatggtccactacgacggaacggtccgtaactcggccggccgg attcttcagttttcgtatggaggagacgggctctctgctgaatccgtcgaacttcagaag atgccgaccgttaatctttcgaatgaagcattcgaaaagaaattcaagtttgaccccagc aacgagaactatgttcgacgaatctttaatgaagaaatcacccgtgaattgatcagtagc gcggaagtcatcaccgaaatcgaacacgaatgggagcagttatacaaagatcgcgaagct ctacgtcaaattttccctactggcgagaacaaagtggtgttgccttgtaacctgcagcgc atgatttgggacgtccagaagattttccacatcaacaaacgagcaccgacagatttgagt ccacttcgtgtaatccaaggcgttagagacctgctagccaaatgcgtcatcgtcgttggc gaagataaattaagcatccaagccaatcagaacgccacgctcttgttccagtgcctggtt cgctctacattgtgttccaaacgactagcggaagaatatcgcctttcatcggaagccttt gaatggctcatcggtgagatcgcaacccgtttccagcaagcacaagctcaacctggtgaa atggtgggagcactcgcagcccagtctctcggtgaacctgccacgaaaatgaccgtcaac actttccattttgctggtgtgtcatccaagaacgtaacactcggtgtcgcccgtcttaag gaaattatcaacatcagtaagagtccgaaatccccgtctatgacggttttcttgagagga gaagcagcgaccgatgctgagaaagctagagaggttttgtgtcggcttgagcacacgacg ttgcgaaaggtcacggccaacacagccatctactacgatccagatccgctgaacacggtc atcctggaagatcaagatttcgtcaatttctactacgaaatgggtgatttcgatcctact cgaatctctccctggttgttgcgtatcgaacttgatcgaaaacgtatgacggacaagcgg ttgaccatggagcagattgctgaaaaagtgtatacgatgtttggtaatgctgtaaaatgc atgttcagcgacgacaacgccgaaaagttggttctcagaattcagatcttgtctgttgac gacgtcaacgaagaagaagaacagcaagttgctcatatggaagatgatgtgtttttgcgc tgtatcgaagtcaacatgctgtctgacatgacattgcagggcattgaatccatcggtaaa gtttacatgcattggccacaaaccgatcagaagaaacgaattgtcgtcactgagactggc gagtttaaggccatcgccgaatggctcctcgaaacggacggtacgcagttgatgagagtg ttgagcgaacgtgatgtcgaccctgttcgtacctattcaaacgacatttgtgaaattatg gatgtgcttggtatcgaggctgctcgaaaatcaatcaaaagagaactgaactcagttctt caatactacgacctttacatcaactatcgtcatctggctcttctttgcgacgtcatgact gccacgggtcatatgacgcccattaacagcatcgacagacaggatactggtgcgttgatg aaatgtaccgtgaaggaaacggtgagcgtgctatcggaagctgctggtcatgccgaagtt gaccctctacgcggcgtttcggaaaatttaatcctaggtcagctaccacgtatgggcaca ggctgcttcgacctgtttctcgatgcggagaagtgcaaaaacgcgattgtcaaaacttca agttag

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