KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_305166
Entry
DAPPUDRAFT_305166 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DAPPUDRAFT_305166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpx03019]
    DAPPUDRAFT_305166
Messenger RNA biogenesis [BR:dpx03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     DAPPUDRAFT_305166
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     DAPPUDRAFT_305166
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-ProteinID: EFX78464
JGI: Dappu1_305166
UniProt: E9GPY0
LinkDB
Position
Unknown
AA seq 205 aa
MTNKESDKCLICTPGQRICLSDNQYIGGAGTYTRQGYITSCLAGVVKVTSQHDKRILIEV
RSGKEQTVVPSAGDVVTARVTQINPRWARCAILCVKDIVLAEPFRGQLRKEDVRATEKDR
VEMYKCFRPNDIILARVLSLGDAHSYVLSTAENELGVVIAYSEEGTPMVPVGWQEMQCPK
TYVKELRKVAKVLPETISNENATGV
NT seq 618 nt   +upstreamnt  +downstreamnt
atgacgaataaagaatcagacaaatgtttaatatgcactcccggacaacgcatatgtctg
tcggataaccaatatattggaggagccggcacttacacaagacaaggttatatcacatca
tgtttagcaggtgttgttaaagtaacttcacaacatgataagagaatcctgatagaggtt
agaagtggtaaagaacagacagttgttccatctgctggtgatgtggttacagccagagta
acacaaataaatcctcgctgggcacgatgtgccattttgtgtgttaaggacattgtattg
gccgaaccctttagaggacagctgaggaaagaagatgtgcgtgctacagaaaaggacagg
gttgaaatgtacaaatgttttcgtcccaatgacattattttagcaagagtgctctcatta
ggtgatgcccattcctatgttttgtcaacagcagaaaatgaattaggtgttgttatagca
tacagtgaagaaggtactcctatggttccagtaggatggcaagaaatgcagtgccctaaa
acttatgttaaagaattgagaaaagttgctaaagttttgccagaaacaatttcaaacgaa
aacgcaacaggcgtctag

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