Daphnia pulex (common water flea): DAPPUDRAFT_305166
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Entry
DAPPUDRAFT_305166 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_305166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_305166
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DAPPUDRAFT_305166
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DAPPUDRAFT_305166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
EFX78464
JGI:
Dappu1_305166
UniProt:
E9GPY0
LinkDB
All DBs
Position
Unknown
AA seq
205 aa
AA seq
DB search
MTNKESDKCLICTPGQRICLSDNQYIGGAGTYTRQGYITSCLAGVVKVTSQHDKRILIEV
RSGKEQTVVPSAGDVVTARVTQINPRWARCAILCVKDIVLAEPFRGQLRKEDVRATEKDR
VEMYKCFRPNDIILARVLSLGDAHSYVLSTAENELGVVIAYSEEGTPMVPVGWQEMQCPK
TYVKELRKVAKVLPETISNENATGV
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgacgaataaagaatcagacaaatgtttaatatgcactcccggacaacgcatatgtctg
tcggataaccaatatattggaggagccggcacttacacaagacaaggttatatcacatca
tgtttagcaggtgttgttaaagtaacttcacaacatgataagagaatcctgatagaggtt
agaagtggtaaagaacagacagttgttccatctgctggtgatgtggttacagccagagta
acacaaataaatcctcgctgggcacgatgtgccattttgtgtgttaaggacattgtattg
gccgaaccctttagaggacagctgaggaaagaagatgtgcgtgctacagaaaaggacagg
gttgaaatgtacaaatgttttcgtcccaatgacattattttagcaagagtgctctcatta
ggtgatgcccattcctatgttttgtcaacagcagaaaatgaattaggtgttgttatagca
tacagtgaagaaggtactcctatggttccagtaggatggcaagaaatgcagtgccctaaa
acttatgttaaagaattgagaaaagttgctaaagttttgccagaaacaatttcaaacgaa
aacgcaacaggcgtctag
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