Daphnia pulex (common water flea): DAPPUDRAFT_306238
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Entry
DAPPUDRAFT_306238 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dpx
Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_306238
Enzymes [BR:
dpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DAPPUDRAFT_306238
Spliceosome [BR:
dpx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
DAPPUDRAFT_306238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
DEAD
R3H
AAA_19
nSTAND3
AAA_22
HA2_N
OB_NTP_bind
ATPase
SRP54
PhoH
ResIII
AAA_14
AAA_7
T2SSE
Xre-MbcA-ParS_M
AAA_11
Ank
Ank_2
Cas3-like_C_2
Ank_5
AAA_16
Ank_3
AAA_29
AAA_23
Motif
Other DBs
NCBI-ProteinID:
EFX76354
JGI:
Dappu1_306238
UniProt:
E9GW06
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MASARNRNGRNNPMPNIYESMKKGLDILLKAFRDDEEAEEYTFDASLSTEQRAYIHASAQ
SMGMKSKSQGKGSERRLTVTKTVVHVKNKVSKLNILPHTVERATKLLQEFPLTNEELQDV
HPLQKQVANIATGQQSHADCIKYHMPIIPQPAKSSALIADRKSLPTWSHREEILNMIAQN
KVVMITGDTGSGKTTQVPQYLLELFSERNEPVRIICTQPRRIAAISVAERVANERGEQLG
GTVGYQIRLENRMSSKTALMFCTTGILLRTLMYQEGNLERVTHLIIDEVHERDRFVDFLL
GVLKSRLPRLPKLRLILMSAALDISVFSNYFGSCPVMHVQGKCFPVAEYFLEDVLELTDH
LGNSTPLEIGVWDGDDKNTKNGAVGFSRNGGQAARMSKLEKNKPSVLDSGAKLTFDSWIQ
EVFVLDNSDALCRLADAVMRSHMPINYKHSQTQITPLMVVAARGRIDLVNSFLQLGADPA
LTAGQWTAANLARSMQHHSVASALEVYQSGKAESLLQNYKFRYDEEIVNVDLVLDLLHVI
EQQNSEGAVLVFLPGYDEIMNIRDRIMYNDSRFAGSGKFEVYTLHSSMQSGDQRRVFFRP
PSGKRKIVLSTNLAETSITIDDIVFVIDTGKVKVKSFDALTGVSALKAEWVPQASAIQRK
GRAGRCREGICYHLFSRERYESFEKYQIPEIFRVPLEELCLQSKNLAPIDLSIEQFIGQV
PEAPNPHVIQRAVKIARSTLNSWQMLQWMDALDPWENVTDLGRLLLELPVEPRAGKMLLT
ATVLHCLDPVLTIVCCLSHRDPFLLPAEPNEKKIAAARKLELAAGTLSDHMAMLRAFNLW
LAARANGKEREFCHRHFLSSAVMDVIHQLRIQILDQLRKSGFVRSFQELNTNASSWVAIK
ACILSGLYPQVARRCRSGKLTTRREASVKMATHLKERPSPNFRVNGWFTRKYQGKFQGDT
YGGLVASLRCVTLVNTVALAIFGGHCRLSNESIKDPVFSSESEDYDDNYEDESTTDESSD
ESDDIEELNEGLHDLVLAEKFCQSPLPDHRKSNASKPTKKNNPKVLSEFHLDEWICLKME
TNPAHQLFALRQKWQALFARRMRDPIGPELPGDKQVVDTLLNILSKEEQASGLPPSPEFL
GIADVRRPNKSYASDNFRSNRRPNPRPGLESRNYCTSNPRPNTKPNSWQANQSSNDVPEG
GGDKNWRANFPRNNSGTFRPNRSEVFSRGPKGKDLGNLRYKTGIADVDFLVGGTRTSASH
AEGNNVEHERGQWSGNDTNRSSSMHDNGTSTYNKGWRNEVDARNGFWFSKKSKSKYQFTT
GKGSTNQMPNSPRDSQPPPANRLAQSAGKSPSESQANKYPLDQPRRIVAKESAQFAQGSV
PRLPRERDSEMPNQESNTNSQSSRKNRKKPQKRKDTNAAHPPTPSS
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgccaggaatagaaatggcaggaataatccaatgccaaacatatatgaatca
atgaagaaaggtcttgatattctcctaaaggcatttcgggatgatgaggaagctgaagaa
tatacatttgatgcaagcctttctactgaacaacgggcatacattcatgcttctgcacaa
agtatggggatgaaatctaaaagtcaaggaaaaggaagtgagagaagactaactgtaaca
aaaactgttgttcatgtgaaaaacaaggtttcgaagttaaacattcttccccatacagtt
gaaagagcaaccaaattacttcaggaatttcccttgactaatgaagaactgcaagatgta
caccctcttcagaaacaagttgctaatattgccaccggtcaacaatcccatgctgactgc
ataaagtatcacatgcctatcattccacaacctgcaaaatcctctgccttaatcgctgat
cggaaatctcttccaacttggagtcatcgcgaggaaattctgaacatgatagcacaaaat
aaggtggtaatgataactggtgatacaggttcagggaagactactcaggttcctcagtat
ctgttggaactcttctcggaaagaaacgaaccggttcgcatcatttgtacacaaccccga
cgaattgctgctatctcggtcgctgaaagagtcgcgaacgaacgtggcgagcaattggga
ggaactgtgggctatcagattcgccttgaaaatcgaatgtcatccaaaactgctctgatg
ttttgcacaaccggaattttgcttcgaacgctgatgtaccaggaagggaatctggagaga
gtcacacatttaattattgatgaagtgcatgaaagagatcgcttcgtcgattttctgctt
ggtgttttaaaatctcgtctcccacgactgccaaaattacggcttatccttatgtctgcc
gccttggatatcagcgtcttctccaactactttggcagttgtccagttatgcatgtgcag
ggcaaatgttttcccgtcgccgagtactttcttgaagatgttttggagctgaccgatcat
ctcggtaattcaacgccattggaaatcggtgtttgggatggagacgacaaaaatacaaaa
aatggagcagttggattttcccgaaacggaggacaagcggctcgaatgtcaaaactagag
aagaacaagccatctgttctggattctggtgccaagttgacatttgattcttggatacaa
gaagtttttgttttggacaactcagatgctttgtgcaggcttgctgatgccgtaatgcga
agccatatgcccatcaattacaaacattctcaaacacaaattactccactaatggtcgtt
gctgcccgaggacgtattgacttggtgaactcgtttttgcagcttggcgctgatccagct
ctgacagctggccagtggactgctgccaatttagcacgctcaatgcaacatcattccgta
gccagtgcgttggaagtgtatcagtcaggaaaagcagagagtttgctacaaaattacaag
tttcgctatgatgaagaaattgtcaacgtggatctagtgttggacctgcttcatgtaatc
gagcaacagaattctgaaggagcagtcctcgtctttcttcctggatatgatgaaatcatg
aacattcgtgaccgaatcatgtacaacgactctcgattcgccggttcagggaaatttgag
gtctatactcttcactcgagtatgcaatcgggcgatcaacgacgagtcttctttcgccca
cctagtggaaaacgcaaaattgttctgtcgacaaaccttgccgagacgagtatcacaatt
gacgatatcgtatttgtgatcgatactggaaaagtcaaagttaaatcttttgacgcgctt
actggtgtgtcggcactgaaagcggagtgggttccacaagcttcagcaattcaacgcaaa
ggaagagcaggtcgttgcagggaagggatttgctatcatctcttctcccgtgaacgctac
gaatcattcgaaaaatatcagatcccagaaattttccgagttccattggaggagctatgt
cttcagtctaaaaatcttgcaccaatcgatttgtcgattgaacagtttattggccaagtt
ccagaagctccaaatcctcatgtgattcaaagggctgtgaagattgcaagaagtacgctt
aattcctggcagatgttacaatggatggatgccttggatccctgggaaaatgtcaccgat
cttggtcggttgctgttagaattaccggttgagccaagagccggtaaaatgctccttacc
gctacggtacttcactgtttggatcctgtcttgacgattgtctgctgcttaagccatcga
gatccatttctcttgcctgctgaacccaacgagaaaaaaattgctgcagcacgcaagctt
gaactcgctgctggtacccttagcgaccacatggccatgcttcgagcctttaatttgtgg
ctagctgcccgtgccaacggcaaagaaagggagttctgtcatcgtcactttttatcgtcg
gcagttatggacgtgatccaccaattgcgcattcaaattttggaccagctgcgaaagtct
gggttcgttcggagtttccaggaactgaatacgaacgcttccagctgggttgcaattaag
gcgtgcattctctctggtctctatcctcaagtagctcgacgttgtcggtccggcaagttg
acaacccgccgcgaagcctcggtgaaaatggccacacatctcaaagaaaggccatcaccc
aacttccgagtgaatggatggtttacgaggaaatatcaaggcaagtttcagggcgacaca
tacgggggacttgtggcttcccttcgttgtgtaaccttagtcaatacggtcgctttggct
atttttggaggacattgtcggttgtcaaatgagtctatcaaagaccccgttttctcatct
gaaagcgaagattatgatgacaactatgaggacgaatcgaccacagatgaatcatctgac
gaatcggatgatattgaggagttaaacgaaggactacatgacttggtattggccgagaag
ttttgccagagtccgctaccagaccatagaaaatctaatgctagcaaaccgacgaagaag
aacaacccgaaggtactaagcgagtttcatctggatgaatggatttgtttgaagatggaa
acgaaccctgctcatcagttgtttgcattacgtcaaaagtggcaggcgctattcgctcgt
cgcatgcgagatcctatcggtcccgaattgccaggtgataaacaagttgtggacacgcta
ctcaatattctctcaaaggaggagcaagcgtccggacttccaccttcaccagaattcttg
ggcattgctgatgtccgacgaccgaacaaatcctatgcgagcgataattttcgttcaaat
cgccgacctaatcctcgacccggattggaatctagaaactattgtacgtcaaaccctagg
ccaaatacgaaacccaattcctggcaggccaaccaaagttccaatgatgttccagaaggc
gggggtgacaaaaattggcgagctaattttccacgaaataattctgggaccttccgcccg
aatcgttctgaagtgttttcaagaggcccaaagggtaaagatctaggcaatctgagatac
aagaccggaattgcagatgtggatttcttggttggcggtacgcgtacgtcagcatcacat
gctgaaggcaacaacgtcgagcatgagcgtgggcagtggtccggaaatgacacaaatcgg
tcctcttcaatgcatgataacggcacatccacttacaataaagggtggaggaatgaagtg
gatgccagaaacggtttctggttctcaaaaaaatccaagtccaaatatcagtttacaacg
ggaaagggcagtacgaaccaaatgcccaattcacctagggattcacagccgccacccgcg
aacaggctggcacagtcggctggcaaatcgccatcagaaagccaagcgaacaaatatccc
ttggaccagccccgaaggatcgttgcgaaagagagtgctcaatttgcgcagggttctgtg
ccgcggcttcccagagaaagagattcggagatgccgaatcaagaatcaaacacgaacagt
cagtcttcgagaaagaatagaaagaagccccagaagcggaaagatacgaacgctgcccac
ccgcccactccttcttcttaa
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integrated database retrieval system
