KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_306425
Entry
DAPPUDRAFT_306425 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03020  RNA polymerase
dpx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DAPPUDRAFT_306425
  09124 Replication and repair
   03420 Nucleotide excision repair
    DAPPUDRAFT_306425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpx03021]
    DAPPUDRAFT_306425
   03400 DNA repair and recombination proteins [BR:dpx03400]
    DAPPUDRAFT_306425
Transcription machinery [BR:dpx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     DAPPUDRAFT_306425
DNA repair and recombination proteins [BR:dpx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DAPPUDRAFT_306425
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 AAA_5
Other DBs
NCBI-ProteinID: EFX87599
JGI: Dappu1_306425
UniProt: E9FYU9
LinkDB
Position
Unknown
AA seq 137 aa
MAAATEISDEDAAVLQFPKEFENAETLLISEVHMLLDHRKLQNESAEDEQELSEVFMKTL
NYTQRFSKFKNRETIAAIRSLLMQKKLHKFELAALANLCPESPEEAKSLIPSLEGRFEDE
ELRQILEDIQTKRSFQY
NT seq 414 nt   +upstreamnt  +downstreamnt
atggcggccgctacagaaatcagtgacgaagatgccgctgttttgcagttcccaaaagag
ttcgagaatgcggaaacattgctgatatctgaagtccacatgttgctggaccatcgtaaa
ttacagaatgaaagcgcagaggacgagcaggaactgtcggaagtctttatgaagacgctt
aattacactcagcgctttagcaagttcaagaatcgtgaaactatcgccgccattcgcagt
ttgctgatgcagaaaaagttgcacaaattcgaactggcagctctggctaatttatgcccg
gaaagccccgaagaggccaaatctctcattcccagtcttgaaggccgatttgaagacgaa
gaactccgacagattctggaagatattcaaaccaagcgaagcttccaatattga

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