Daphnia pulex (common water flea): DAPPUDRAFT_309030
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Entry
DAPPUDRAFT_309030 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dpx
Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpx03036
]
DAPPUDRAFT_309030
Chromosome and associated proteins [BR:
dpx03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
DAPPUDRAFT_309030
microRNA pathway
RISC loading complex
DAPPUDRAFT_309030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_platform
DEAD
Dicer_dimer
ResIII
Dicer_dsRBD
Helicase_C
PAZ
dsrm
Motif
Other DBs
NCBI-ProteinID:
EFX86072
JGI:
Dappu1_309030
UniProt:
E9G444
LinkDB
All DBs
Position
Unknown
AA seq
1607 aa
AA seq
DB search
MSKVRRVKSLNLTKNPIMESPSKSCNVDTEFTPRDYQIELFQAALDENIIVYLPTGSGKT
FIAALLIKEKSHEVTKPLDSGGKRTVFLVPTVVLAIQQAAYLRRHTYLKVKEFYGSMGVD
IWEKDRWNIEFDSNHVLVMTAQIFVDILNHAFFSPHQLNLLVFDECHAAVKDAPMKQVLS
KLKNCEVSQRPKILGLTAALFRMRCKPEKVPDLIQQLSETMGCVVRIPSDVETVARSSTK
PCETILQYEDKNSNPNPDADELSRIIFVMVSSLMQQLEQQYGEGNSKDGPDVNKQPDKID
VLFDALNDIDYLLSTIGPYGAFHCAHVYIRILERTKSRAKTAPFLTDLIRKQVCNGLNFI
ISEVCTPYFAKYSPVDRLLLFVQPRDIAKHDTTLEFLKPLFTMGKAAGRNSSLKETQILN
MKQNEIMQYFREGLCNLLVATSVLEEGIDIPDCNLIIRFDRIKTYCDYVQTKGRARSKKA
FYCILVSRGETESCLADLAQFHSIEQQLLSTGNFEDERDNAIDNLFSQIIPPYVPFGEDG
PRITLPSSISLINRYCGQLSSDPDVSLAPQLTTKKVAESDVDPIQLQKIKDILKKLPTDA
SKYSSINNLFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIKLHELKELDDNHL
FPVPRLNVIDDESSTEDEENSAAPQLNKENIAVYNRRLPVCFSNCRPLPGQPCFVYAIDF
TLTKPCLDITKLYFPFAVDTKLAILTSKVIPAICPFPVVTRAGEFQVNLCGADSVILDQS
QLGKLERFHQFVFQDVLFLWKRQLDFDVLASDLQYLVVPLQTANDKIDFALVENMINAPA
INWEKPPYAGDHFIFDSSRLIDSVIVPSYKPLGTLNAFYVDRVSDLTPLTPFPNNEFKTY
ASYFQLKYKLTLTNQQQQLLQVSREISGKNFLVNRVASTREETPMHLVAELCHVHPLAGS
IWKQVVWLPCILHRLDRMLVAEELRVLVYKEANIGIEFLPGSVNVSSVWCPLRLRPQKSR
AESRCVADPTLLASTLKPSAFMDYLDLDVNMMWSFEYDESEKDLSPNQSSIEQTPAETFI
ATSSPKKPSELSLPNPGSYSAFKEFPDSIDEQRNKWTDLANGNPSDDLPTCPPETFNLKF
DSGNSGMLSNFGPSPGMILEALTLAKTHEGFDMERSETIGDSILKLVISIYVYGETGSDR
CDEGRLSLMRMRQINNKHLFKLGAKKDIGEFTVAQRFELMANFLPPGFKTPTDPDTDINA
HVQQYVLMKNVADCMEALIGVYLTTTGIKGAIKLMDWMGLKTVPRLEIATFNEMNGFPIL
PSTFGSSTLNDTQLKDQEEALSQLFAGLESFEKRLRYTFKNKALLIEALTHASYIPNRIT
NCYQRLEFLGDAVLDYLVTRYYYDNPCQYTPAILTDLRSAMVNNETFAVMAVQNRFHLYL
KHLSLSLNVILDRFVRSQEENGHLLMHNYFVLEETSEPHQSLASNIDVPKVLGDIFESVA
GAIFVDSGMSLDAVWKSYLPFLHDALEKFNEKIPISALRVLHERYPNALKFRKSESLADG
RLCVAIEIQGTRVFKGAGGNSKTAKSAAAKYALSVLNKQDDNQVEEC
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtcagacgagtgaagagtctcaatctgaccaaaaacccaatcatggaatct
ccaagcaaatcatgtaatgttgatactgagtttactccaagggactatcagattgaactg
ttccaagcagcgttggatgaaaacataattgtttacctaccaactggttcaggaaagaca
ttcattgcagcccttctaatcaaagaaaaatctcatgaagtcacaaaaccgttggattca
ggaggaaaaaggacagtttttcttgtacccaccgttgtgttggctattcaacaggccgcc
tacttgcgacgccacacatatttgaaagttaaagagttttacgggagtatgggagttgac
atctgggaaaaagacaggtggaacattgaatttgattccaaccatgtcctggtgatgact
gctcaaatatttgtggacatcttgaaccatgcctttttctcacctcaccagctcaattta
ctggtcttcgacgagtgtcatgctgctgttaaggatgcaccgatgaagcaagttctttcg
aaactgaaaaactgtgaagtttcccagcgtcccaaaattcttggattgactgcagctctg
tttaggatgagatgcaaaccggagaaggtgcctgatctaatccagcaactctccgaaaca
atgggatgcgtggtcaggattccctctgacgtagaaactgtcgctcgctcttccaccaaa
ccgtgcgaaaccatcttacagtatgaagacaaaaattccaatccgaatccagatgcggac
gaattaagtcggattatttttgtaatggtgtcttcccttatgcagcaacttgaacaacag
tacggtgaaggcaattctaaagatggacccgatgttaacaagcagcctgacaaaatcgat
gtgttgtttgatgcactgaatgacattgactacctcctgagcacaataggaccgtacggg
gcttttcattgtgcccatgtctacattcgcattttggagcgtaccaagagtcgagccaag
accgctccatttttgacagacctaatcagaaagcaagtttgtaatggactgaattttatc
attagtgaagtttgcactccttatttcgccaagtattcaccggtggaccgacttttgctc
tttgttcagccgagagatatcgcgaaacatgacacaacattagaatttctgaagccattg
tttacgatgggcaaggcagcaggtcgaaactcatccctgaaagaaactcaaattctcaac
atgaaacaaaacgagattatgcagtattttcgtgaaggtctctgcaacttgctagtggcc
acttctgtcctggaagaaggcattgatattcctgattgcaatttaatcattagatttgat
agaatcaaaacttattgtgattatgttcagaccaaaggtcgggctagatcgaagaaagcc
ttctattgcatattagtgagtcgtggtgagacagaaagttgcctggcagatttagcccaa
ttccacagcattgagcaacagcttttgtccactggaaactttgaagacgaacgagataat
gccatagataacttgtttagtcaaatcatcccaccgtatgttccatttggagaggatggg
cctcgaattaccttaccaagcagcatatcgctcatcaacaggtactgtggtcaactatct
tctgatccggatgttagtttggctccacaactgactaccaagaaagttgcagaaagcgac
gttgatcccatccaattacagaaaatcaaggacatactaaagaaattaccgactgatgct
tccaaatattcatcgatcaacaatttattccaatgccatctcttccttccgttgaactct
cccttgagagatgaggtcattggagatgttatgcccacaaaacgtctagccaagcgagca
gttgctttaaaagcatccatcaagctccacgaactgaaagagctcgacgacaatcacctt
ttcccagtgccacgactgaatgtgatcgatgacgaatcgtcaactgaagatgaagagaat
tcggcagctcctcagctcaataaggaaaacatcgcagtatacaaccgacgtctgcctgtc
tgtttttccaattgccgccctcttcctggacagccttgcttcgtctatgcgattgacttc
acgttgaccaagccttgcctcgatatcactaaactctatttcccattcgcagtcgacaca
aaactggccatcttgacgtccaaagtcatccctgccatttgcccatttcctgtggtaacc
cgagccggtgaatttcaagtcaacttgtgcggagctgattcagtcatccttgaccagagt
cagctgggaaaacttgaacgatttcatcaattcgtcttccaggatgttctctttttgtgg
aagcgacagctggattttgacgtgctggcctctgacttgcagtacctggtggtccctctg
caaacggcaaacgacaagatcgactttgccctcgttgaaaatatgatcaacgccccagca
attaattgggagaaaccgccctacgctggagatcattttatctttgattcaagccggctc
atcgattcggttatcgttccgtcttataaaccgctgggcactctgaacgctttttacgtg
gaccgtgtttctgatttgacacccctcactccgtttcccaacaacgagtttaaaacgtac
gcatcttatttccagctcaagtacaaactcacgttgactaatcagcagcagcagcttctt
caagtcagtcgtgagatatctggcaaaaatttcctcgtcaacagagttgcttcaacaaga
gaagaaacgccaatgcatctagtggccgagttgtgtcatgttcatccactggccggatcc
atttggaaacaggtggtctggctcccttgcattctccaccgtcttgatcgcatgttggtg
gctgaagaacttcgtgtccttgtctacaaggaagccaacattggaattgaattcttacct
ggatccgtcaacgtttcttccgtttggtgccctttgcgacttcgaccccaaaagtctcgt
gccgaaagccgctgtgttgcagaccccacacttttggccagcactttgaaaccttccgcc
ttcatggattacttggatcttgacgtcaatatgatgtggagttttgagtatgatgaatcg
gaaaaagatctcagtccaaaccagtcttccatcgaacaaaccccggccgaaacattcatc
gctacatcctcaccgaagaaaccaagtgagttgagtttgcccaatcctggcagctattct
gcattcaaagaatttccagattcaattgacgagcaaagaaacaaatggactgatctggct
aatgggaatccgtcggatgacctaccaacttgtccaccggaaacttttaatctgaaattc
gattccggaaactccggaatgctctccaactttggcccttcacccggaatgatattagaa
gccctcacccttgccaagacgcacgaaggattcgacatggaacgttcggaaacgattggc
gactccattttaaagttggtcatatccatttatgtgtacggagaaacgggtagtgaccgc
tgcgacgaagggagactcagcctcatgcggatgcgccagatcaacaacaaacatctcttc
aagttgggcgccaaaaaggacattggggaatttactgtcgctcaaagattcgaactaatg
gcgaatttcctccctcctggattcaaaacgccgacggatcctgacactgacatcaatgct
catgtccagcaatatgtcctgatgaagaatgtggcagattgcatggaggctttgattggt
gtttatctgaccactactggaatcaagggtgccatcaagctaatggactggatgggattg
aaaactgttccccgactcgagatcgccaccttcaacgaaatgaatggattcccgatactc
ccgtcaacgtttggatcatccactttaaacgatactcaactcaaagaccaagaagaggct
ctatcgcagctctttgccggattagaatcatttgaaaagcgtctccgctatacattcaag
aacaaagctttgctgattgaagcgctaactcacgcctcctacattcccaaccggatcacc
aattgttaccagaggctggaattcctcggtgatgctgtgctagattatctcgtgacgcgg
tattactatgacaatccttgtcagtacaccccggccattctaacggatcttcgctcggcc
atggtaaacaacgaaacctttgctgtcatggcggtccagaaccgtttccacctctacttg
aagcatctttccttgtctttaaacgtgattctggatcgattcgttcgatcacaagaagag
aacgggcatctgctgatgcataattattttgttcttgaagaaaccagtgagccacaccaa
tccctggccagcaatattgacgttcctaaagtgttgggcgacattttcgagtcagtggca
ggtgccatatttgtcgattcgggcatgtcgctcgatgcggtgtggaaatcttacctaccc
tttttacacgacgcattggaaaaatttaatgagaaaattcccatttctgccctgcgagta
cttcatgagcgctaccctaacgccctcaaattcaggaaatcggaaagtcttgccgatggg
agattgtgcgtggcgatagaaatccaagggacgcgtgtgtttaagggcgctggcggtaat
tcgaaaacagctaaaagtgctgctgccaaatacgcactgagcgttctcaacaaacaggac
gacaatcaagtcgaagaatgttga
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integrated database retrieval system
