Daphnia pulex (common water flea): DAPPUDRAFT_309072
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Entry
DAPPUDRAFT_309072 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03013
Nucleocytoplasmic transport
dpx03015
mRNA surveillance pathway
dpx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DAPPUDRAFT_309072
09122 Translation
03013 Nucleocytoplasmic transport
DAPPUDRAFT_309072
03015 mRNA surveillance pathway
DAPPUDRAFT_309072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_309072
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_309072
Enzymes [BR:
dpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAPPUDRAFT_309072
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DAPPUDRAFT_309072
Spliceosome [BR:
dpx03041
]
Complex C
Other components
EJC/TREX
DAPPUDRAFT_309072
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DAPPUDRAFT_309072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
EFX85992
JGI:
Dappu1_309072
UniProt:
E9G3G8
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNEDPLVCEDEEVTERVAIEGIGDAPAKGKVKGISIHSSRFQDSVFKPEILRAIVDCG
FEHLSEVQRECLPQAVLGMDVLCRAKSGTGKTTVFVLATLQQLETVENQVCVLVVCHSRE
LAIQIYNAYECLSKHMTTIKVGVFVGGVNIRKDEEALKTNCPHIVVGTPGRLTTLLRTKR
LNLRTLKHFVLDECDKMLQDTYMLRDVQEIFSNTPREKQVMMFSATLSKEIRPVCQKFMQ
DPTEVDVDDDESKHTLRGLQQHYVKLKDDEKNGKLFELLGVLEFNQVVIFVRSIARCMAL
CESLGEQNLPAIAIHLSMTEAERLSRYQQFNDSKERILVATHWEGRGMAIERVNIVFNYD
MPENSDRYLDRVAYAGRFGTQGLGITFVTDEKDAKVLNDVQERFDVSITPLSDEIYLSSH
TKICQ
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgaagatcctttggtttgcgaagatgaggaggtgacggaacgagtagcc
attgaaggaattggagatgctccagcaaagggaaaagttaaaggcatatccattcatagc
tctcgttttcaagatagtgtgttcaagccggaaattttgagagctatcgttgactgtggc
tttgaacatctttctgaagttcagcgtgagtgtcttcctcaggctgttttgggaatggat
gtgttgtgtcgagccaaatctggaacgggtaagactactgtttttgtattggcaactctc
caacaattggagacggtggaaaatcaggtttgtgttcttgttgtttgccattctcgagag
ctagctatccagatctacaatgcatatgaatgtttgtccaagcacatgactaccatcaag
gttggtgtattcgttggtggtgtgaatattcgcaaagatgaggaagctttgaaaacaaat
tgccctcacattgtggttggaacccctggtcgtttaacgacgctgctccgcacgaagaga
ctaaacctccgcacacttaagcactttgttcttgacgaatgcgacaaaatgcttcaagat
acatacatgcttcgagatgtacaggagattttcagcaacacacctcgtgaaaaacaagtg
atgatgttcagcgccacgctgagcaaggagatccgtcctgtctgccaaaagtttatgcaa
gatccaaccgaagtggacgttgacgacgacgagtccaaacacactcttcgcggtctccag
cagcactatgtcaaactaaaggacgacgagaagaacggaaaattatttgagctactcggc
gtacttgagtttaaccaggtcgttatcttcgtgagatccattgcgcgttgtatggcgctc
tgcgagtcgctaggcgagcaaaacttgcctgccatcgccattcacttaagcatgactgag
gcagaacgtctgtcgcgctaccaacagttcaacgactcgaaagagcgaattttggtagct
acacattgggaaggtcgtggcatggccattgaacgtgtcaatatcgttttcaattacgac
atgcctgaaaactcagacaggtacctggatcgtgtcgcttacgctggtcgtttcggaact
caaggtttgggaatcacatttgtaactgatgaaaaggacgctaaagttttaaatgacgtt
caagaacgtttcgacgttagcatcacacctttgtcagatgagatttatttgtcatcccac
actaaaatatgccaataa
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