Daphnia pulex (common water flea): DAPPUDRAFT_318220
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Entry
DAPPUDRAFT_318220 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K10754
replication factor C subunit 1
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03030
DNA replication
dpx03410
Base excision repair
dpx03420
Nucleotide excision repair
dpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAPPUDRAFT_318220
03410 Base excision repair
DAPPUDRAFT_318220
03420 Nucleotide excision repair
DAPPUDRAFT_318220
03430 Mismatch repair
DAPPUDRAFT_318220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpx03032
]
DAPPUDRAFT_318220
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_318220
DNA replication proteins [BR:
dpx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
DAPPUDRAFT_318220
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
DAPPUDRAFT_318220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
Rad17
AAA_22
AAA_30
AAA_5
PTCB-BRCT
RuvB_N
AAA_14
AAA_33
AAA_16
nSTAND3
RNA_helicase
AAA_18
Zeta_toxin
AAA_17
CCDC-167
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
EFX80623
JGI:
Dappu1_318220
UniProt:
E9GI64
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MAPTTLLIVESLETLFGHHASQKSQNCCSQGRHSKFFHVDRPEIVEITGFRLGRAYHETC
VLKENKSGRCTKEGAVVSASKLKTNAKTPETPLQPVDIGSVFGNKPIQRSKEIPEKRKRT
VIEDHSDEDFEATLQQLDEAPVTKKSKVVEKSTSKKGKTDSPTKKEKMKSPAKEEKSKPA
LHLKMRKHLQKSQPGWNEEKDKRIKSQLKELDSNSNKTSSTPKSNKKMKAETTIVKETPK
KKSSKDDDDDDPDVIDSPAFDALEKRKEKAENYRKFLASRRDGGAKNPGSKPVPEGAPGC
LTGLTIVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGDDAGPSKLSKAKDLN
VPMLSEDDFLKLIATRPAGQGLSSPAAKKAPTTPRSAHKAAASRKAEPEPPSKPITVSSP
PKKKSPEPKKIDLKPQQSSSTAAPIRKAEPISVKMEVAEGNDQAQLPWVDKYKPTSLKQV
IGMHGDRSIAKKLVYWLKSWYDNRGKKLAKPSPWSTNDDGAFFKAALLSGPPGIGKTTTA
HLAAKELGYDLVEMNASDTRSKRLLHEHVMELLSSQSLSSYAHGSAQIEGGRKRVLVMDE
VDGMAGNEDRGGIQELIAMIKTSKIPVVCICNDRQHPKIRSLSNYCYDLKFTKPKIEQVR
GAMMSICFKEGLSLKPEALDEIIMGANQDVRQVLHHLSMLASGKKSLSTESAKLEASKSK
KDLKLGPWDVVKKVFSAEEHKGMSIHDKTGLFFQDYSFGPLFVQENYPCVVPQAAKGNAI
KTLDLLGRTAHCMSQTDLIEKVIRSQNAWSLLPVEAVFASVVPGQLMEGFISSQIVFPSW
LGKNSRTNKMDRLLQELQTHMRLKISGSKRAVNLDYLPYVLNSIVGPLKRSGADGVSEAI
RAMESYDLMREDLDSLLEVAQWPHKPDIMAGIEGKVKAAFTRAYNKEAHMTPYAAGQVKK
GRSKDTADDLEALDGDEDGLAGEEDDEEQSQDPSLDAMIKVKKESKKTASSSSSSGATAA
ASRKKTGAPAATRGRGRGGRKKAAE
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaccacccttttgattgttgaatcattggagacgttatttggtcatcatgcc
tcccaaaagtcccaaaactgctgcagtcaagggagacattcgaaattttttcacgtcgat
cgccccgaaatcgtcgaaatcaccggattcagactcggaagggcctatcatgaaacctgc
gtccttaaagaaaacaaaagtggaagatgtaccaaagaaggagctgttgtttcagcctcc
aaactcaagacaaatgccaaaacacctgaaactccacttcaacctgttgacatcggctca
gtattcggcaacaagcccatccagaggagcaaggaaataccagagaaaaggaaaagaaca
gtcattgaagatcacagtgatgaagattttgaagccacactgcagcagttggatgaagcc
ccagtgacgaaaaagtcaaaagtggtcgaaaagtcaacaagtaaaaagggcaaaaccgat
tctccaaccaagaaagagaaaatgaaatctcctgccaaggaagagaaatccaagccagcc
ctccatctaaaaatgagaaaacatcttcaaaagagtcagcccgggtggaatgaagagaaa
gacaaaagaatcaaatcccagctgaaagaattggactctaattcaaataaaacctcttca
acccccaagtcaaacaaaaagatgaaggcggagacaacaattgtgaaagaaactcccaaa
aagaagtcgagcaaagatgatgacgacgacgacccagatgtaatcgactcgccggccttc
gatgccttagaaaagcgaaaagaaaaggccgagaattaccggaaattccttgcttctcgc
agagacggcggagcgaaaaatcccggcagtaaacccgttccggagggagctccgggatgt
ctgacgggattgaccattgtcgttacaggcgttttggaatccctgcaccgtgaagaggcc
gaagggcttgtcaagaaatatggcggcaaagcgcctaaagctgtcagcaagaatacgtcg
tatctattggccggcgatgatgcgggtccctctaagctgtcgaaagccaaggatctcaat
gtacccatgctcagtgaagatgatttcttgaaattgatcgccacaagacctgccggccaa
ggtttaagttctccggctgccaagaaagccccgacgacacctaggagcgcccataaagcc
gccgcgtccaggaaagccgagccagagcctcctagcaagcccattactgtttctagtccg
cccaagaagaaatcccccgaacccaagaaaatcgatctcaaaccgcagcagagcagcagc
acggccgctcctatcaggaaagccgagcccatttcggtaaaaatggaagtcgccgaagga
aacgaccaagcccaactaccctgggtcgacaagtacaaaccgaccagcttaaaacaagtg
attggaatgcacggagatcggagcatcgctaaaaagttggtctactggctgaaaagttgg
tacgataatcgcggcaagaaacttgcaaagcccagtccctggtcgaccaacgacgacgga
gccttcttcaaagccgctttgctctccggcccacctggcattggaaaaaccacgacggcc
catctggcggccaaggagctgggctacgacctggtggagatgaacgcctcggatacccgg
agcaagcggctgctgcacgagcacgtgatggagctcttgtcgtcgcagtcgctgtcgtcg
tacgctcacggttcggctcagattgaaggcggccgcaagcgggtgctcgtcatggacgaa
gtggacggcatggcgggtaacgaggatcgcggcgggatccaggagctgattgccatgatc
aaaacgtcgaaaatcccggtcgtttgcatctgcaacgaccggcagcacccgaaaatcagg
agcctctccaattattgctacgatttaaagttcaccaagccgaagatcgagcaggtccgc
ggggccatgatgagcatctgcttcaaagagggactcagcttgaaaccggaagctctcgac
gagatcatcatgggagccaatcaggacgtccgccaggttcttcaccacttgtcgatgctg
gcctcgggcaagaagagcctgtcgaccgagagcgccaaactggaggcgtccaagagcaag
aaggatctcaaactgggaccgtgggacgtcgtcaagaaggtcttctccgccgaggagcac
aaaggaatgagcatccacgacaagacgggcctctttttccaggattacagcttcggtcct
ctgttcgtccaggagaattatccgtgcgtcgtgcctcaggcggccaaaggcaacgccatc
aagacgctggacttgctgggccgcaccgcccactgtatgtcgcagacggacctgatcgag
aaagtcatccgctcacagaacgcttggagtctgctgccggtggaggccgtcttcgccagc
gtggtgcccggccagctgatggagggtttcatcagctctcaaatcgtctttcccagttgg
ctgggcaagaattcccgtaccaacaaaatggaccgtctcctgcaggagctgcagacgcac
atgcgtctcaagatctctggatcgaagcgggccgtcaatctcgactaccttccctacgtc
ctcaattcgatcgtcggacctttgaagcggtcaggagccgacggggtcagcgaggctatc
cgggcgatggagagctacgatctgatgagggaggatctcgactcgctcctcgaggtggct
caatggccacataaaccagacatcatggccggaatcgaagggaaagtcaaggcggccttc
acccgggcttacaacaaagaagctcacatgacaccgtacgctgccggccaagtgaagaag
ggccgatcgaaagacacggccgacgatttggaagccctggatggagatgaggatggattg
gctggcgaggaggacgatgaggagcagagccaagatccatcgctggatgccatgatcaaa
gtcaagaaggaatcgaagaagacggccagcagcagcagtagctcaggagcaacagcagcg
gccagcaggaaaaaaacaggagccccagctgccaccagaggtcgaggccgtggaggtcgc
aagaaagccgctgaataa
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