Daphnia pulex (common water flea): DAPPUDRAFT_328629
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Entry
DAPPUDRAFT_328629 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03013
Nucleocytoplasmic transport
dpx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DAPPUDRAFT_328629
09122 Translation
03013 Nucleocytoplasmic transport
DAPPUDRAFT_328629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_328629
03041 Spliceosome [BR:
dpx03041
]
DAPPUDRAFT_328629
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
DAPPUDRAFT_328629
Spliceosome [BR:
dpx03041
]
Complex C
Other components
EJC/TREX
DAPPUDRAFT_328629
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DAPPUDRAFT_328629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-ProteinID:
EFX69933
JGI:
Dappu1_328629
UniProt:
E9HEA2
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MASLISQEVWKTWESHGHIEFVKLLESWIGTDNNSQHIPSIGSKDLFRAIYEFLWQAIKG
GIKRELVLSTIGDILVLHGDLASLTLDVLNVIDHETLVNENNDERQKLCSMLKELENWLS
DSMIKERLEIDTLQDCSLLKTKKIFYSRFIKVKTKLFYKQQKFNLLREENEGYAKLITEL
NQEIDDTITPLYILQVVQSLIGCFNLDPNRVLDVIMESFECRPQLHSRLFVPLIRSYMSD
SLTLCEVLGFKFTSFDPSSTPNSLFVITALLLQHGVIHLEDIYRWLTPKDSEIDESAAKE
LADAKEYARRMNIIAVPKEDDKIEELIEERAPYNQKFGLCEALLSVGAWEQASTLLKRHP
EFFVTSYRPISSSICKLVDYVIEPVYRTRCCISPKLSGKPVLSVGVWNFPKTAKEMKELR
ETAFPMLLSLGPHLYNDPVLLHKLIRLCNTALDDCGLNSSKKIPQDLDSLYFDVLTLFDV
VILPSLALMESNCCVAEEIWNVLKKLPYEHRYRLYGLWKNDTFQSHSLLIRRKVDCVKRI
KYIMKRVSKDNVKPTGRVLGKLSHSCPGFLFDYILSQIQIYDNLIGPVVDSLKYLTNLSY
DVLGYCVLEALSNPDKERTNHDGTTISMWLTALSAFCGAIYKKYNIDLTGLLQYVANQLK
AQKSLDLLILQEMVHKMGGIEASEEMTKEHMEAMQGGELLRAEAAHFGQVRVTKKAAQRL
KETLLESNLAIPLCLLIAQQRNCVVYRETENNHLKLVGKLYDQCQDTLVQLGTFLALNMS
VDDYVRRLPQLGSLLSDYHIHADVAFFLARPMFAHSINSKYDELRRAEKNSKNLLPAQKT
QKYLEAVRLVMTPICESVRPLCAARVWEDLSPQFFATFWSLTVYDLSVPNAAYEREVQRL
KVAIQQTNENRDLPASKRKKELDRCTALMDKLLEEEKKQKDHNERIMARLTQEKDSWFLC
RSAKLAKTETITQFLQLCLFPRCVFTATDALFCARFVQLMHNLKTPNFSTLICYDRIFCD
ITYTVTSCTENEANRYGRFLCAMLETVMHWHSSKKIFDEECANYPGFVTKFRVGNQPSEN
NDHVDFENYRHVVHKWHHKIAKALVVCLESKDYVQIRNALIVLIRILPFFPVITPLVGVI
DRNVEVVRSEQRDKRQDLSAMAISYSGQLKNKKTSIPEYEFHLVTRKPVTKTAPQSTNPL
AVAANPGAQPENGVVKHEGVNGVEKASTNLHDTPTSTPSESQSSTPVAAGLKEIKKEKEI
RETKDKVKEERIKGEKDRHKESIEKREEIPDRTREKRVKERKEDREDRPHSGKLDREDEW
MERDREDRKERRNIQETEEERRERKGERKRDRVLEDVLMDVKRRKEDEREKVRSPRHGNG
SPSDGNADRRGHNRESPLSREASDRSFDRADRTERARRSTDSKRR
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgttaatttcccaagaagtatggaaaacgtgggaatcacatggacacattgaa
tttgtgaaactgctggaaagctggattggtaccgataacaatagtcaacatattccttca
attgggagtaaagatttgtttcgtgccatatatgagttcttgtggcaagccatcaaaggt
ggaataaaaagagaactagttttatcaaccattggagatattctggttttgcatggtgat
ctagcatcgttgacactagatgttctcaatgttattgaccatgaaacgttggttaatgag
aataatgatgaacgtcaaaagttgtgcagcatgctaaaagaactggaaaactggctaagt
gattcaatgattaaggaacgcttagagattgacacattacaagattgcagtttactgaag
acaaagaagatattttactcccgtttcatcaaagtaaagacaaaattattttacaagcag
cagaagtttaatcttttacgggaggagaatgaaggctatgcaaaactaataactgaactc
aatcaagagattgatgacaccatcactccactctacattttacaagttgtacagtcttta
attggttgcttcaacttggatccgaatcgggtgttagatgtgattatggaatcatttgaa
tgtcggccacagcttcacagtcgtctttttgttccactgattcgctcgtacatgtcagat
tcgttgactttgtgtgaagtcttagggttcaagtttacttcattcgacccgtcttctaca
ccaaactctcttttcgtcatcactgctcttttattgcagcatggagtcattcatcttgaa
gatatttatcgttggcttacgcctaaagacagcgaaatcgacgaatccgccgctaaagaa
ttagcagacgcaaaagagtatgctcgtcgtatgaatatcatcgctgttccaaaagaagac
gacaaaattgaagaattgattgaagaaagggcaccttataatcagaaatttggactgtgt
gaagctcttctttcagtgggagcttgggaacaagcgtctactcttcttaaacgtcatcca
gagtttttcgtcacatcttatcgacccatctcgagcagtatctgcaaactggtcgactac
gtaattgaaccggtgtatcgcactcgatgctgcatatctccaaaactttctggcaaacca
gttttatctgtcggtgtatggaactttcccaagacagccaaggaaatgaaggagttgaga
gaaactgctttccccatgctactttctttgggaccccatttgtataacgatcctgtcctc
ctgcacaagttaatccgtttgtgcaatactgcgttggatgattgtggcttgaacagttcg
aagaaaattccgcaagatctggattcgctgtacttcgacgttcttacactgtttgatgtt
gtaatattgccatcactcgccctcatggaatcgaattgctgtgtagcagaagaaatctgg
aatgttttgaagaaattgccttatgagcaccgttatcgtctgtatggcctgtggaagaac
gacacgtttcagagccattctttgctgatccgccgcaaagtagactgcgttaaacgcatc
aagtacatcatgaagcgtgtgagcaaggataacgtcaagcccacgggtcgagtgcttggc
aagcttagtcacagctgccctggctttctttttgactacattttgtcccaaattcaaatc
tacgacaacctgattggccctgttgtggattcactcaagtacctcacaaacctttcgtat
gatgttcttggttattgtgttttggaagcactttcgaacccagacaaggagcgcaccaac
catgatggaactaccatctctatgtggctgacggctctttccgccttttgtggagccatt
tacaagaaatacaacatagatttgactggacttctccaatacgttgccaatcaactcaag
gcgcaaaagagcctagatcttctcattcttcaggaaatggtgcataaaatgggaggaatc
gaagcgtccgaggaaatgacaaaggaacacatggaagcaatgcaaggcggtgaactatta
agagctgaagctgctcattttggtcaggttcgggttaccaagaaagctgcccagcgtttg
aaggaaacattgctcgaatccaatttggccattcccctctgtcttcttatcgcacagcag
cgcaattgcgttgtttatcgagaaacagagaataatcatctaaagttggttggtaaacta
tacgaccaatgtcaagatacgctcgttcagcttggaacattcttggctttgaatatgagt
gtcgacgactatgttagacgccttccacaattaggatcattgctctctgactaccacatc
catgctgatgtcgcattttttctggcgcgaccaatgtttgctcattcgatcaattccaaa
tacgatgaattacggcgtgctgaaaagaattccaagaatttacttccagcccagaagact
caaaagtatttagaggctgtacgattggttatgactcccatttgtgaatcggttcgtcct
ttgtgcgcggccagagtttgggaggatctatctcctcaattttttgccactttttggtcg
ctgacggtctacgatttgtcagtgccaaatgctgcatacgaacgtgaagtgcaacgcctg
aaggtagccattcaacagacaaatgaaaatcgtgatctgccagccagtaaacggaagaaa
gagttggatcgctgtacggctttgatggacaaacttctggaagaagaaaagaaacagaaa
gatcacaatgaacgtatcatggcgcgtttaacacaagaaaaagacagctggtttctctgt
cgatcggctaaattagcaaaaacggagacgatcacccagtttcttcaactttgccttttt
cctcgctgcgttttcaccgcgacagatgccttattttgcgctcgctttgtacagcttatg
cacaatttgaaaacaccaaacttttcaacgctgatttgctacgatcgcatattttgtgat
ataacatacactgtgacttcttgtacggaaaacgaggcaaatcgttatggtcgctttttg
tgtgccatgctcgaaactgtaatgcattggcactcaagcaagaaaatatttgacgaagag
tgtgccaattatcctggattcgttaccaaatttcgcgtcggcaaccagccttcggaaaac
aacgatcacgttgactttgaaaactatcgtcatgttgttcacaagtggcaccacaagatt
gccaaagcgctagttgtatgtcttgaatcaaaagactatgtccagattcgaaatgcactg
atcgtcctaatacgcattttgccattcttccccgttatcacgcctcttgtcggggtaatt
gatcgaaatgtcgaagtagtacgcagtgagcaacgagacaagcgacaggatttatcagcg
atggctatttcatatagtggtcaattaaagaacaaaaaaacgtcaattccagaatatgaa
ttccatctggtgacgaggaaacctgtaactaaaacagctcctcaaagtaccaatccactt
gctgtggcagcaaatcctggtgctcagcctgagaatggagttgttaagcatgaaggagta
aatggggtggaaaaagcttcaacaaatttgcatgatactcctacctctactccaagcgaa
tctcagtcgagcactccagtcgctgctggcctcaaggagattaaaaaagaaaaggaaata
agggagacaaaggataaggtgaaggaagagagaataaaaggagagaaagatcggcacaaa
gaatcgattgaaaaacgagaagaaattcctgaccgtacgagagagaagagggttaaagaa
cggaaagaagatagagaagataggcctcattcgggcaagcttgaccgtgaggatgaatgg
atggagcgtgacagagaagatcgcaaggaacgacgtaatatccaagaaaccgaggaagaa
cgtcgtgaaaggaaaggcgagcgtaaaagggatcgggtgctggaagatgttttgatggat
gtcaaacgtcgaaaggaggacgaacgagaaaaagtaagatccccaaggcatggaaacgga
agtccctctgatggaaacgctgatagacgaggacacaacagagaatcacctctttcacga
gaagcatcggatcgttcatttgaccgcgcagatagaacagaacgagcccgacgctccacc
gacagcaaacggagatga
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