Daphnia pulex (common water flea): DAPPUDRAFT_45613
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Entry
DAPPUDRAFT_45613 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
dpx
Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpx04121
]
DAPPUDRAFT_45613
Ubiquitin system [BR:
dpx04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
DAPPUDRAFT_45613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-ProteinID:
EFX85957
JGI:
Dappu1_45613
UniProt:
E9G3M5
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MSFDDSDRFEEDSLCSWGSEPESLCNNWRGWKKPLIVTTTLNSPLLASNQRRAEGELHVL
SLSELCSRVVAAHIAFEVVEQAWQPVPEPLQLRIAFWSFPDNEEDIRLYSCLANGAADEF
NKGENLYKSRAVKEPLQIGFHLSASVVSPSQQTAQGKSNTFNVAVTFDRRRITSCNCTCA
SRAFWCAHVVAVCLYRIHQSHLVTLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTA
QRLLDELLSAQPSAINTVCGAPDPTAGASASEQTSWCLDENTLHENIRKILIKFCVPSPT
VFSDVNYLSSTAPPAAAEWSSLLRPLRGREPEGMWNLLSIVREMFKRHDRNAVPLLEVLT
EEIMSCEQIMVWWFNTKVALHNGSAAGYGSGIKASNLGSQSQASQHACSSLCDEVVILWR
LAALNPGLSGEERDLLRQQFSEWHVKVIDKVTKSKGLTVNATHGAPHVVAGNGAGPSTPR
RTSQSFKAEVEVFTGFKPSVEACYLSWDDYPVPGVTYTQGHRLYHCPFTCFRHTETHGRF
DIGPINSSSAVITNDLPVHMLQRRAVVQGDYAQAMDDIRHERERIGGFHAASPLVRPERE
MDRAGNRSSVSSEGFCENEGDPGVEAFEPALPSGLRDLTRQDSDDPALGSDTNEPEVLAV
DSCTSTDKEKSSPEDFDADSDWSGVDARLKNPRLEGSSNNEVVLPSGSGLLAGSSRDTDD
LASLSASPREFRTMALPAAQGAVPREPCVVTVPNRNGGVFGELKPLDDPLEILFARAEGL
HAHGHSAEACELGIQLATELLANPPDLLVELPPVITKNGKKKKTNPACHQISCLASATLA
KCAFLCTVLAENPDYYHLAFRVGMFGLELARPPATTKPLEVKLAHQESELVTLLKRIPLG
KCHLELSILREKAEQLRDGILRSRGDALLPLSLATFIFEALVTASGTQPVRAPFYSTHRL
PTDETLGFEAAVSALGLKANVSEADHPLLCEGTRRQRGDLAVMLLVHYKDDADKLAKIME
KLLDRQVHPLYKAPLLSSFYTNNPTPMGQTCSSNRQMRQRREGIEAGMIAISLDSNSSAH
GAGPSQTSGGATASNLAPSFSRNSTGVMGPCGGKINRFKNKRLYPSVPNQPSEASAHFMF
ELAKTVLLKAGGNSSTSLFTQPINSQNPRGPIRALQMCAFQIGLYALGLHNCVSAKWLSR
TYSSHVSWITGQAMEIGSQALWFLISTWEGHLTPPEVASIADRASRGHEANMVRAAAELA
LSCLPHAHALNPNEIQRAILQCKEQSSEMLERACLAVESAAKGGGVYPEVLFRVARCWHE
LYEQRMPSARRGARVLPSIEQPPPPIPLHVPPCSMQQPQANMAGVGVPVPYAMTSIVPFP
LAYSFLSGTAPGPNPPAQIPGVPVNFLAPNGAGGATPNATFSYAPPIPGLQYFPSVTCPM
PMGTTSAPPNPPPGPSPLMPMSVGPAQGTNNRPPPPLPPPGCQVTLQPLIHTPNSTTHQA
PPLFVQQSQVNSVRSPPTAAGSLPNQALTPTQLHFLLAAYRVGIVALETLGRRAHDDRPQ
ARYSRNPPYGEDVKWLLSVAKKLGTDYLQQFCVVTVNSVVSPFVLHEIAVEAAHFFAYTG
ATPPNPYMQHLRSRVLTPLIQKCHQMYIQCINHKLYHLNPTDYDDFLTIIQTARTAFHLI
PTGPMQFNEFLQSIQKSKSCTKDLWGRLMAIIRQPAV
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatgactcagaccgttttgaagaagattctctttgtagctggggcagcgag
cctgaatctctctgcaataactggagaggatggaagaaacccttgattgtcaccacaacc
ctcaattcaccacttttggcctccaatcaaagacgagctgaaggtgagttacacgtgttg
tcgctttcggagttgtgctctcgtgtcgttgctgcccacatcgccttcgaagtagttgaa
caagcttggcaacccgttcccgaaccgctccaattgcgcatcgccttctggtcgttcccg
gacaatgaagaggacattcgcctttactcctgcttggccaacggtgcagctgacgagttc
aacaagggcgagaatctctacaaaagcagagccgtcaaagaacctcttcagattggtttt
catttgagcgcttcggttgttagtcccagccaacagacagcccaaggtaaatcgaatacc
tttaatgtggccgttacgtttgatcggaggcgtatcacttcatgcaactgcacttgcgct
tcgcgggctttttggtgcgcccatgttgtcgctgtctgcctttatcgcatccatcagtct
catttggtgacccttcgtgctcctgtcagcgagtccctgagtcgtttgcagcgcgaccaa
ctgcaaaagttcgctcagtatcttattagcgaattacctcaacaaattctaccaaccgcg
cagagactccttgatgaacttctatcagctcaaccgtctgccatcaatacggtttgcggt
gcgcctgatcctacggcgggtgcatcagccagcgaacagacgtcatggtgcctcgatgag
aacacacttcatgagaatattcggaaaattctgattaaattttgcgtaccgtcaccgacg
gtattcagcgatgtgaattacttgagctcaaccgcaccccccgccgcggctgaatggagc
agcctgttgcgcccattaaggggtcgggagccggaaggcatgtggaacttgctttccatc
gttcgcgaaatgttcaaacgccacgaccgcaatgccgttccacttttggaggttttgacg
gaagagatcatgtcgtgcgaacagattatggtgtggtggttcaacaccaaggtggcgtta
cataatggaagtgctgctggatacggtagcgggatcaaggccagcaacttgggaagccaa
tctcaagcatctcagcacgcttgttcgtccttgtgcgacgaagttgtcatcctgtggcga
ttggctgctctcaatccaggcctttctggcgaagaacgcgatttacttcgacaacagttt
agcgaatggcacgttaaggttattgacaaggtcacaaagagcaaaggcttgacggtcaat
gccactcatggcgcaccccatgttgtagccggaaacggtgctggaccgtctactccccga
cgaactagccaatcattcaaagcagaagttgaagtttttactggctttaaaccgtctgtt
gaagcttgttaccttagctgggatgattaccccgttcctggagtgacctacacccaaggc
caccgcctctaccattgcccatttacctgctttcgacacactgagacacacggtcgattt
gacatcggtccaatcaattcttcttcggccgtcattaccaacgatttgccagtacacatg
ctccagagaagggcagtagtgcaaggcgactatgcccaggccatggacgatatacgtcac
gagagggaaagaattggtggattccacgccgcttcacctcttgtccgacctgaaagagaa
atggaccgagcaggaaatcgtagcagcgttagcagcgaaggtttctgcgagaacgaaggc
gatccaggcgttgaagcatttgaaccagcattgccttctggtctacgggatcttacccgc
caagacagcgacgatccggctctgggttctgacactaatgaaccggaagtcttggcggtg
gatagttgcacttcaaccgataaagaaaaatcctcacccgaagattttgatgccgattcc
gactggtctggagttgacgcccgtttgaagaatccccgactcgaaggaagcagtaacaat
gaagtagtacttccatctggatcaggactactagctggatcttctcgagacactgacgac
ctggccagcttgtctgccagtcctcgagaatttcgaacaatggccttaccagcagctcaa
ggtgctgtaccgcgagaaccttgcgtcgtgacggttcccaaccggaatggtggagtattt
ggcgagttaaagccactcgatgatcccctcgagattctcttcgcaagggctgaaggactt
cacgcccatggacacagtgccgaagcttgtgaactggggattcaactggctacagaacta
ttggcgaacccgcccgatctattggtggaattgcctccagttatcacaaagaatggcaag
aagaagaagacaaatcctgcttgccaccaaatcagctgtttggcttcagcgactctagcc
aagtgcgcctttctctgcactgttttggcagagaatccggattattatcacctagctttc
agggtcggaatgtttggactggaattggctcgaccgccggccactacgaagccattggaa
gtgaaattagcacatcaagagtcagagttggtcactcttttgaagcgaattcctctaggt
aagtgtcatctagagctgtcgattctgcgtgaaaaggctgagcagttacgagatggcata
ctgaggtcgagaggcgacgctttgttgccactttcgctcgccacgtttatattcgaagcc
ctggttacagcatctggaacacaaccagtccgggcgccattttattctacccatcgactt
ccgacggatgagactttaggatttgaagctgctgtttccgccctggggttaaaggcaaat
gtttcggaagcggatcaccccctgttgtgcgaaggaactcggcgccaacgaggcgatctc
gccgtcatgttgctggtgcattacaaggacgatgcagacaaactggccaaaatcatggag
aagttgctggatcgtcaagttcatccactctacaaggcaccgcttctgagcagtttctat
accaacaatcctacgcccatgggacaaacgtgttccagcaatcgacagatgcgccaacgc
cgtgaagggattgaagctgggatgattgccatttctctcgattcgaattcatctgcacat
ggagccggcccttcacagacaagtggaggcgctacagcatcgaacttggcgccatcattt
tcaagaaatagcactggagtcatgggtccttgtgggggcaaaataaatcgctttaaaaac
aagcgactgtatccttcagtccccaatcaaccatccgaagcctctgctcatttcatgttt
gaattagcaaaaactgttttactgaaagccggaggaaatagtagtacatcacttttcacg
cagcccatcaactctcagaatcctcgtggtcccatccgggctcttcagatgtgcgccttc
cagatcggtctctatgccttgggtcttcacaattgcgttagcgctaaatggctgagtcgc
acttattcttctcacgtttcctggataacaggccaagcgatggagattggttcacaggcc
ctatggttcttgattagcacttgggaaggtcatttgactcctccagaagtggctagtata
gccgatcgtgcatcccgtggtcatgaggcgaatatggtgagggcagctgccgagctggcc
ctttcttgtttaccacacgctcacgctctcaatcccaatgagattcaacgagctattttg
cagtgcaaagaacagagcagcgaaatgctggaacgcgcatgtctggccgtcgaaagcgcc
gccaaaggaggtggagtctaccctgaagttctcttccgagtggctcgttgctggcacgag
ttgtacgagcagcgcatgccgagtgcccgccgaggagctagggtcttgcccagcatcgaa
caacctccaccaccaattccgctccacgtgccaccttgctctatgcagcaacctcaagcc
aatatggccggagtcggtgttccggtgccatacgccatgacgtcgattgttccctttcct
ttagcctacagtttcctttctggcactgcacctggaccgaacccacctgctcagatcccg
ggagttccggtcaattttcttgcaccgaatggagctggtggtgcgacccccaatgctaca
ttttcatacgctccccctatacccggtctacagtactttccatctgtgacgtgccctatg
ccaatgggaaccacatccgcacctcccaatcctcctccaggtccttctcccttaatgccg
atgtctgttgggccagctcaagggacgaataaccgtcctccaccccctttacctcctcct
ggctgtcaggttactctacagccgctaattcacacgcccaacagtacgacgcatcaagca
ccacctctttttgtccagcaatcacaagtcaactcggtccgatctcccccaacagcagcc
ggatcgttgcccaatcaggctctgactccgacacagctgcattttctcttggcggcctac
cgagttggtattgtagccctggaaacacttggcagaagggctcatgatgatcgcccgcag
gctcgctactctcgtaatccaccctacggtgaagatgtcaaatggcttctctctgtggcc
aagaaacttggaacggattatctgcaacagttttgcgtcgtgacggtcaacagtgtcgtt
agtccgtttgttcttcatgagatagctgtcgaagcggcccattttttcgcctacactgga
gcaacaccacccaatccttacatgcaacacttacgctcgcgagttttgacgcctcttatt
caaaagtgtcatcaaatgtacatccagtgcatcaaccacaagttgtatcacctcaatcct
accgactacgacgactttctaacgataattcaaacggccaggacggctttccatctcata
ccaacgggaccgatgcagtttaatgaatttctgcaatctattcaaaagtcgaaatcctgc
acgaaagacttatggggtcgtttaatggccatcattcgtcaaccagccgtttga
DBGET
integrated database retrieval system
