Daphnia pulex (common water flea): DAPPUDRAFT_50975
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Entry
DAPPUDRAFT_50975 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12587
exosome complex component MTR3
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_50975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_50975
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DAPPUDRAFT_50975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF4796_C
Motif
Other DBs
NCBI-ProteinID:
EFX80662
JGI:
Dappu1_50975
UniProt:
E9GIE3
LinkDB
All DBs
Position
Unknown
AA seq
227 aa
AA seq
DB search
LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG
HQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASA
SIPMYDLMIGTSVRQIPKLFLLDPTKDEEWQPELNHDENNSNLTVGFMPSTHQVSAYVHE
GVSKTEDLEQMLKLATEYCLKVQPVVQLCLKETVEKILSNEGEKVDE
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacaggaattatcagtcaggcaaaaggatctgcatacatagagcaaggtaacaca
aaattggtttgtggtgtgtatggtccgcgtgaagtacagaagaaatctgacttcagtctt
aatggccagctcttctgtgaatttaaatttgccccattttcgtgccaaaagagacgtgga
catcaacaagacaatgaagagcttgtattgagtggtttactaagagaagctttggaagca
gcagtttgtcttcataaattccccaaagcccaagtcgaagttaatgttatggtcattgaa
aatgatggttcacctctagcagctgctctaacctgtgcaagtctagctctagcaagtgcc
agcattcccatgtatgatttgatgattggaacatcagtgagacaaatacccaagctcttc
ttgcttgatccaaccaaagatgaagaatggcaaccagagcttaatcatgatgaaaacaac
tcaaacctcactgttggttttatgccatcaactcatcaggtatctgcctatgtacatgaa
ggtgtatcaaagacagaagatcttgaacagatgctcaaacttgccactgagtattgctta
aaagttcaacctgtagtccaactttgcttaaaggaaactgtagagaagatattatctaat
gaaggggaaaaagttgatgaatga
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