Daphnia pulex (common water flea): DAPPUDRAFT_51128
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Entry
DAPPUDRAFT_51128 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DAPPUDRAFT_51128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpx03021
]
DAPPUDRAFT_51128
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_51128
Transcription machinery [BR:
dpx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
DAPPUDRAFT_51128
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
DAPPUDRAFT_51128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-CCHC
zf-CCHC_4
zf-CCCH_10
Motif
Other DBs
NCBI-ProteinID:
EFX80712
JGI:
Dappu1_51128
UniProt:
E9GIQ6
LinkDB
All DBs
Position
Unknown
AA seq
242 aa
AA seq
DB search
MDTVMAPIANIKFDIEVALEQQLGAQNLPFPGMDKSTAMVCTLFTKGQCQRASFCPYRHL
RADRTIVCKHWLRGLCKKGDQCEFLHEFDMAKMPECYFYARFSACHNKECPFLHIDPETK
IKDCPWYDRGFCRHGPTCRHRHVRRVLCMNYTAGFCPDGPECKFVHPRFELPPLPDDIKG
DKRKMPLVCHFCGEVGHKADRTNLRPLDEVTCYRCGLRGHYANRCNKGHLAFLSNQPTEE
RS
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggataccgtaatggcgcctattgccaacatcaaatttgatattgaagttgccttggag
caacagctgggagcccaaaatctcccatttcccggaatggacaaatcaacggcaatggtg
tgcactctgttcactaaaggtcaatgccagagagcaagtttttgcccatacagacacctc
agagcagaccggacaattgtgtgtaaacattggctcagaggactatgcaagaaaggagat
cagtgtgaatttctccatgaatttgacatggctaagatgccagagtgttatttctatgcc
agattcagtgcttgtcacaacaaagaatgccctttcttacacattgaccctgaaacaaag
atcaaagattgcccttggtatgatcgtggtttctgccgtcacggaccgacttgccgacac
cgtcatgttcgacgtgtgctctgcatgaactacacagcaggcttctgtcccgacggcccc
gaatgcaaattcgttcatccgagatttgaattacctccacttccagatgatatcaaaggt
gacaagagaaagatgcctctagtctgccatttttgtggagaagtgggacataaagctgat
cgaacgaatttgagacctttagatgaagtcacctgttatagatgtggactgcgcggccac
tatgcaaatcggtgtaacaaaggacatctggctttcttgagtaaccagccaacagaagaa
agaagttaa
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integrated database retrieval system
