Daphnia pulex (common water flea): DAPPUDRAFT_57163 Help Entry DAPPUDRAFT_57163  CDS       T04347                                  Name (GenBank) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism dpx  Daphnia pulex (common water flea) Pathway dpx03013   Nucleocytoplasmic transport dpx03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:dpx00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     DAPPUDRAFT_57163    03015 mRNA surveillance pathway     DAPPUDRAFT_57163  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:dpx03019]     DAPPUDRAFT_57163 Enzymes [BR:dpx01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      DAPPUDRAFT_57163     5.6.2.5  RNA 5'-3' helicase      DAPPUDRAFT_57163 Messenger RNA biogenesis [BR:dpx03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      DAPPUDRAFT_57163    mRNA cycle factors     Common to processing body (P body) and stress granule      DAPPUDRAFT_57163 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_19 AAA_30 ResIII NPHP3_N SLFN-g3_helicase ATPase AAA_16 nSTAND3 DEAD Helicase_RecD SRP54 AAA_22 Motif Other DBs NCBI-ProteinID:  EFX74403 JGI:  Dappu1_57163 UniProt:  E9H192 LinkDB All DBs Position Unknown AA seq 1129 aa AA seqDB search MSVDTFGPNSQTLTFLDTEENDLLGADTQGTDFDFRDFTLPSQTQASQIDHASLHKSMGK HQANGLDTIDSQLATAMKNLNDLQFEEEDEEGYYSKDLPPHACKYCGIHDPGCVVMCNIC KKWFCNGKGNTSGSHIVNHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFIPAK ADSVVVLLCRQPCAAQSSLKDMNWDIEQWKPLIADRCFLSWLVRSPSEAEQMRARQLTAQ QLNRLEEMWKEKPEASFEDLERPGVDEEPQHVLLRYEDGYQYQNIFGPLVKLEADYDRRV KEAQTQDNVHVRWDVGLNKKTVAYFSLQKTDSDMKLMHGDELRLRYLGELHKPWTGLGHV IKLPDNYSEEVGIELKNSNGAPTECSTNFVVDFVWKSTSFDRMQSALRKFAVDESSVSAY IYHRLLGHEVEDIVFRLHLPKHFSAPDLPELNRSQVFAVKQAVQRPLTLIQGPPGTGKTV TSATIVYHLAKLGSGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPVSFLA LHNQVRCLEGASELRKLVQLKEEVGELSQGDEKRYRMLKRQAERELLEAADVLACTCVGA GDVRLARIKFASILIDESMQATEPECMVPVVLGARQLILVGDHCQLGPVVMCKPAAKAGL SQSLFERLVVLGIRPFRLEVQYRMHPRLSEFPSNFFYEGSLQNGVCAEDRILRGVDFPWP MPDRPMFFYVTLGQEEIAGSGTSYLNRTEASNVEKIATRFLRSGVKPEQIGIITPYEGQR AYLVQYMQHQGSLHAKLYQDIEIASVDAFQGREKDLIIMSCVRSNENQGIGFLNDPRRLN VAMTRARYGIIIVGNPKVLAKQPVWNHLLHFYKENHVLTEGALNNLKESMMQFPKPKKPI NSFNPGQHFMSTAVYDARQAMVPGSVYDRSGASQPPNNNGMNTYIPRATANVGDPYSRLH DPIGYIAPERAQAALSAMPVPLGVFMNMTHVPPRFHGQQQQGMHGSSKSNQRPKDNARGS GPRAGKTASKGSSSLFTQSLSQNTQDVSTQPFSQGGMALTQGMSQGMSQTVSGFGALSQS GLSQLDPSQDAYMSSDYQSQMDGLLSQDSTYQGGRSAFFRHGSQFTQVG NT seq 3390 nt NT seq  +upstreamnt  +downstreamnt atgagtgtggacacttttgggcccaattcgcaaacgctcacgtttctcgacaccgaggaa aatgatttacttggggcagacactcagggaactgatttcgattttcgcgattttactttg ccgagtcaaacccaggcttcacaaattgatcatgccagccttcacaaatcaatgggaaaa catcaggcgaatgggctggacacgattgattctcaacttgctactgcaatgaaaaatttg aacgatctccagtttgaggaagaagatgaagagggctattacagcaaagatttgccacca catgcatgcaagtattgcggcatccatgatcctggttgtgtggtaatgtgtaatatttgc aagaaatggttttgcaatggcaaaggtaatacttctggctcccacattgttaatcatctt gtacgagccaaacacaaggaggttacattgcatcgagatgggccattgggtgaaacagtt ttggagtgctattcttgtggagtcagaaatgtttttgttttggggttcattcctgctaaa gcagattcagttgttgtgctgctgtgtcgccaaccttgtgctgctcagtcatcattaaaa gacatgaactgggacattgaacaatggaaaccacttatagctgatcgttgtttcctcagt tggcttgttcgaagtccttcagaggccgaacagatgagagctcgtcaattgacggcccag caattaaaccgtttggaagagatgtggaaagagaaacctgaggctagttttgaagacctg gaacgtcctggcgttgacgaagaacctcagcacgtattgctgcgatatgaggatggctat caatatcagaatatttttggtccgctagtgaaacttgaagcagactacgaccgacgagta aaagaagcccaaactcaagacaacgtccacgttcgctgggatgttggtcttaataaaaag actgtcgcttactttagtcttcaaaagacagatagcgatatgaaactgatgcatggtgac gaattaagattgcgttaccttggggaactacacaaaccgtggactggtttgggccacgtc attaaacttccagataactatagcgaagaagtcggaattgaattaaagaattcaaacgga gctcctacagaatgttccacaaatttcgtcgtggattttgtctggaaatcaacgtctttt gataggatgcaatcggccctgcggaaatttgcagttgacgaaagtagcgtttcagcttac atttatcatcgtttgcttggtcacgaagttgaagatatcgtattccgcctacatctccct aaacatttctctgctcctgacttgcctgagctgaatcgatctcaggtttttgcggtaaaa caagcagttcaacgtccattgacattaattcaaggacctcctggtaccgggaaaacggtt acatcggccaccatcgtgtaccatttagctaaactaggatcagggccagtattagtttgc gctccgtccaacattgctgttgaccaattgactgaaaagattcatcgaactggtctgaaa gtggtccgtttgtgcgcgaaatccagagaggccattgattcacccgtctcgttcttggcc ttgcataatcaagttcgatgtcttgaaggagcttcagagttgcgaaagttggtccagctt aaggaggaagtcggtgagctttcacagggagatgaaaagcgataccgcatgttaaagcga caagcagaacgagagctactcgaagcagcagatgtattagcgtgcacttgtgttggtgct ggtgatgttcgcttggctcgcattaagtttgcatctatcttgatcgatgaatcaatgcaa gctactgaacctgaatgcatggtccctgtcgtcctaggagcaagacagctcattctggtt ggagatcattgtcagttgggcccagtggtgatgtgtaaaccagctgccaaagctggtctc tcgcaatcactgtttgaaagactggtagtacttggcatccggcccttccgtttggaagta cagtaccgtatgcacccaaggttgtctgagtttccttccaacttcttttacgagggatca ctacagaatggtgtttgcgcggaagaccgaatccttcgtggggtagatttcccttggcca atgccagataggcccatgttcttctacgttacattgggtcaggaggaaattgctggctcg ggcacgtcctatttgaacagaacggaagcgtcaaatgtggaaaagatcgctacacgtttt cttcgatccggagtcaaaccagaacaaattggcatcatcacaccttacgaagggcaaaga gcttatcttgtacagtacatgcaacatcaaggatcactacatgctaaattataccaagat atcgaaatcgctagtgtagatgctttccagggtcgcgagaaagacctcatcatcatgtcg tgtgttcgttcaaacgagaaccaaggaatcggttttctcaacgatccccgtcgtttgaac gttgctatgactcgcgcccgttacggaatcattattgtaggcaatcctaaagtgttggcc aagcagcctgtatggaatcacctgcttcacttttacaaagaaaatcatgttctcactgag ggagctctcaacaacctcaaagaatccatgatgcagtttcccaagccaaagaaaccaatt aatagttttaatcctggtcagcatttcatgtccacagccgtctacgacgcacgccaggcc atggttcctggttccgtctatgatcgttcgggtgcgagtcaaccaccaaacaacaatggt atgaatacttacatacctcgagccacggccaatgtcggagatccgtacagccgtctgcac gatccaatcggttacattgctccagagagggcacaggccgctctttctgctatgcccgtt cccttgggtgtctttatgaacatgacgcacgtcccgcctagattccacggccagcagcaa caagggatgcatggttcatccaaatccaatcagaggccgaaagacaatgcccgaggaagt gggcctcgcgctggcaaaaccgcaagcaagggaagttcttcgctgtttacacagtcactt tcgcagaatacacaggatgtatcaacgcagcctttcagccagggtggcatggctctcacc caaggaatgtcacaggggatgtcgcagacggtctcgggcttcggagcactatcgcaatcg ggtctatcccagttagatccgtcacaagacgcctatatgtcatcagattatcagtcgcaa atggatggactgctctctcaagactcgacgtatcaagggggccgttcagccttcttccgc catggctctcaattcacgcaggtaggttga

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