KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_59069
Entry
DAPPUDRAFT_59069  CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03018  RNA degradation
dpx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DAPPUDRAFT_59069
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DAPPUDRAFT_59069
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpx03019]
    DAPPUDRAFT_59069
   03041 Spliceosome [BR:dpx03041]
    DAPPUDRAFT_59069
Messenger RNA biogenesis [BR:dpx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DAPPUDRAFT_59069
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     DAPPUDRAFT_59069
Spliceosome [BR:dpx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    DAPPUDRAFT_59069
SSDB
Motif
Pfam: LSM SM-ATX Hfq
Other DBs
NCBI-ProteinID: EFX72525
JGI: Dappu1_59069
UniProt: E9H700
LinkDB
Position
Unknown
AA seq 79 aa
MSARQTPNEFLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYG
DAFIRGNNVLFISTQKRRN
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagtgctaggcaaacacctaacgaatttctgaagcaaattatcggtcgcccggttgta
gttaaactcaataacggagtcgattatcgaggagtcttggcttgtctagacggctacatg
aacattgctttggagcagaccgaagaatacagcaatggccagctgaagaacaaatatggt
gatgcttttattcgtggaaacaatgtactctttatcagcacacagaaacgaagaaattga

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