Diaphorobacter nitroreducens: BA022_00535
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Entry
BA022_00535 CDS
T04937
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BA022_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpy03019
]
BA022_00535
03009 Ribosome biogenesis [BR:
dpy03009
]
BA022_00535
Enzymes [BR:
dpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BA022_00535
Messenger RNA biogenesis [BR:
dpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BA022_00535
Ribosome biogenesis [BR:
dpy03009
]
Prokaryotic type
rRNA processing factors
BA022_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ASI67195
LinkDB
All DBs
Position
complement(119659..122739)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAH
QFMAHVMPEHAGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPH
YKLERLKHDDPRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAARGATRPQGQGQQRPATAPTPAPQRPAAAPAPEQGFFAWIKSLFGFGAAPAPAP
VAAPAQTPAEPGARGEGRRGERGGRRGERTGERSGERGGERNGNREGGEGRGRRGEGRGG
ERSAEGRENREPREPRNGRDGERRGDRAEGESRREPRDGRGGRERGERNAQPPVQSAADL
ANTPVTTDADVAVTEERTARTGERRERGERGERRERGGERGGERRERGPRTIDANAPAAG
ADFADTAPLAALPDLDLSGAEVGTSGAEAPAGEERRERRSRDRYGRDRRERGERGPRNAE
ASATGADAEAPAAPLMDLDLPAPAAAAEEDSAPARRSYFASAPASAPAATPQAAPEATAA
VTPPPAAVAAPAPAPAPVAAAPVPAPAPAATAVAPATGGMPRVQAFTLPVDTLQQVAQAS
GLQWVNSDAQKIAAAQAAIAAEPKPVHVPRERAPVVVLDEGPLVLVETRRDLGAMQLPFD
QDNAAA
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaagccgtcgtcacgcgcgtggaaccgtcgctggaggcctgcttcgttgactat
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaaacagtatttcgccgag
ggcgtatcacccagccaggccaggatccaggacgtgatcaaggaaggccaggagctgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatcagc
ctggccggccgctatgtggtgctgatgcccaacaacccccgcggcgggggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgagctcaaggaggcgatggaccagctggagtacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgttccgcgcccgagttgcaa
tgggacctgaactacctgctcaagctgtggaccgccatcgatggcgccgccaaggccggc
aagggtgccttcctcatctaccaggaatccagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggtgacatcctcatcgacactgacgacatctacgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccggcaaggtcaagcgctaccgcgacgac
gcaccgctgttctcgcgcttccagatcgagcaccagatcgaatccgcctacgcgcgcacc
gtgaccctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtcagcgtg
gacgtgaactcggcacgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagccgccgacgaagtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggagatgagccgccagcgcctgaagccgtcgctgtccgaaggcgcgcatatc
cgttgcccgctgtgcgacggcaccggccacgtgcgcgacacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacagcaccgccgccgtgcactgccag
gtgccggtggaggtggccagcttcctgctgaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtctccgtggtgctgatccccaacaagtcgctggaaacaccgcac
tacaagctggagcgcctcaagcacgacgacccgcgcctggaaaacctggacgccagctac
aagctggccgacgtggaggaagaccagaccaaggtcacgcgccgctcgcaggagcccacc
aacaagcagacgcccgtgatcaagggcgtgttgcccgacgcgccggcccctgtggccgag
ccgcgccccgaaggcgccgcccgcggcgccacgcgcccgcagggccagggccagcagcgc
ccggcaacggcccccacgcccgcgccccagcgcccggccgccgcaccggcgcccgagcag
ggcttcttcgcatggatcaagagcctgttcggctttggcgccgcacccgcgcccgctcct
gtggcggcccccgcgcagacgcccgcggaacccggcgcacgcggcgaagggcgtcgcggt
gagcgcggcggtcgccgtggcgaacgcactggtgaacgcagcggcgagcgtggcggtgag
cgcaacggcaaccgcgaaggcggcgaaggccgcggccgccgtggcgaaggccgtggcggc
gagcgcagcgccgagggccgcgagaaccgcgaaccgcgtgagccacgcaatggccgcgac
ggcgaacgccgtggcgatcgcgcggaaggcgagagccgccgcgagccgcgcgatggccgt
ggcggccgcgagcgcggtgagcgcaacgcacagccgcccgtgcagtctgcggccgacctg
gccaacaccccggtcacgaccgatgccgacgtggcagtgaccgaggagcgcacggcacgc
accggcgaacgccgcgaacggggtgaacgaggcgagcgccgtgagcgcggtggcgaacgc
ggcggcgagcgccgcgaacgcggcccgcgcaccatcgacgccaacgcccccgccgctggc
gccgactttgccgacactgcgcccctggccgcattgccggacctggacctgtccggcgct
gaagtcggtacttccggcgccgaggcccccgccggcgaggagcgccgcgagcgccgttcg
cgcgaccgctatggacgcgaccgccgcgaacgtggcgagcgcggcccgcgcaatgccgag
gccagcgccaccggtgccgatgccgaagcgcctgccgcgccgctgatggacctggacctc
cccgctcccgctgcggcggccgaggaagactccgcccccgcacgccgcagctatttcgcc
tccgctccggcatctgccccggcggcaacgccgcaggccgcgcccgaagccacggccgca
gtgacgccacccccggccgccgtggcagcccccgcaccggcgcccgcgcccgttgcagcg
gcacctgtgcccgcaccggctccggctgccaccgcggtggcgccggcaaccggtggcatg
ccgcgcgtgcaggcattcacgctgcccgtggacacgctgcagcaggtggcgcaggcttcg
ggcctgcaatgggtgaattccgacgcccagaagatcgccgccgcgcaggccgcgattgcg
gccgagcccaagcccgtccacgtgccgcgcgagcgtgcgcccgtggtggtgctggatgaa
ggtccgctggtgctggtggaaacccgccgcgacctgggtgcgatgcagctgccgttcgac
caggacaacgcggccgcctaa
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