Diaphorobacter nitroreducens: BA022_01180
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Entry
BA022_01180 CDS
T04937
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BA022_01180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpy03400
]
BA022_01180
Enzymes [BR:
dpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BA022_01180
DNA repair and recombination proteins [BR:
dpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BA022_01180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASI67312
LinkDB
All DBs
Position
complement(264781..268275)
Genome browser
AA seq
1164 aa
AA seq
DB search
MQLPKLSPGKRFTLPRPVGSADALLLARLGEREKAAGRTTAIVTADATDAQRLIDEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRIQQRDRDTGADVVLVPATTALYRL
APPSFLAGYTFHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSA
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARAKFRQRWRELLEG
DPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGNEATVVLHGDLETAFQRFWQD
TRDRYRLIQGDPDHPTLPPEALFLGAEQFYAQAKQHAQLSLRPGVEDVADNAQFQKLPDL
SVVRGAEDPLARLQAHIRATAQRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEFQGT
PEERVGIATAALASGFAWMEEGLDLVTETELFAAGSTTRRRKKQEQASDVEALIKDLSEL
KVGDPVVHNQHGIGRYRGLIHMDVGNKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIG
RYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAAREGHAFRYSPNDY
EQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVAGGK
QVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGESQSGNMMEIGFQLYNEMLAEAVKQLKAGKEPDLLAPMQAATDINLHAPA
LLPDDYCGDVHLRLSFYKKLATAKTGDQIDGLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
APYGVVKVDAAPGVITITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERELPDPAAR
AQMVRDVLRSLGQPLAEAQAAVPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgcccaaactctcccccggaaaacgattcaccctgccccgccccgtgggcagc
gccgacgccttgctgctggcccgcctgggcgagcgtgaaaaggccgcgggccgcaccacc
gccatcgtcaccgccgatgcaaccgacgcccagcgcctcatcgacgagatggccttcttc
gcgcccgagttgcgctgcgcgctgtttcccgactgggaaacgctgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcggctggccacgctctggcgcatccagcagcgc
gacagggacacgggcgccgacgtggtgctggtgccggccaccacggcgctgtaccggctg
gcgccgccctcgttcctcgcgggctacaccttccatttcaaggtcaagcagaagctcgac
gaggccaagctgcgcgcccagctcacgctcgcgggctaccagcatgtgtcccaggtggtg
ggccatggcgaatacgcggtgcgcggcgggttgatcgacctgttcccgatgggctcggcc
gtgccgtaccgggtggacctgttcgacgacgagatcgactccatccgcacgttcgacccc
gacagccagcgcagcctctacccggtgcccgaggtgcgcctgctgcccgggcgcgagttc
cccatggacgacgcggcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgcgcagccgcatctacaaggacatgggcaacggcgtggccacggccggcatc
gagtactacctgccgctgttcttcgacgagaccgccaccgtgttcgattacctgggcaac
gaagccaccgtggtgctgcacggcgacctggagacggccttccagcgcttctggcaggac
acgcgcgaccgctaccgcctgatccagggcgacccggaccaccccaccctgccgccggag
gcgctgttcctgggcgccgagcagttctacgcccaggccaagcagcatgcccagctgtcg
ctgcgccccggtgtggaagacgtggcggacaacgcgcagttccagaagctgcccgacctg
tccgtggtgcgcggcgccgaggacccgctggcgcggctgcaggcgcacatccgtgccacg
gcgcagcgcgtgctgctgctggccgaaagcgacggccggcgcgagagcctgctggacttc
ctgcgggcctcggggttgaacccgccggctttcgattcgctggccgaatttcaggggacg
cccgaagagcgcgtcggcatcgccacggcggcgctggcctcgggcttcgcgtggatggaa
gaagggctggacctggtcaccgagaccgaactgttcgccgccggctccaccacgcgccgg
cgcaagaagcaggagcaggccagcgacgtcgaagcgctgatcaaggacttgtccgagctg
aaggtgggcgacccggtggtgcacaaccagcacggcatcgggcgctaccgcggcctcatc
cacatggatgtgggcaacaagaaccccgacggcagccccgcgctgcaggagttcctgcac
ctggaatacgccgacaaggccgtgctctacgtgcctgtgagtcagctacaactcatcggc
cgctacacgggcgtgtctgccgacgaggccccgctgcacaagctgggcagcggccagtgg
gaaaaggccaagcgcaaggccgccgagcaggtgcgcgacgccgcggccgaactgctcaac
atctacgcccgccgcgccgcgcgggaggggcatgccttccgctactcgcccaacgactac
gagcagttcgccaacgacttcggcttcgaggagaccgcggaccagaaggccgcgatccac
gccgtggtgcaggacatgatcagcccgcgccccatggaccggctggtctgcggcgacgtc
ggctttggcaagaccgaggtcgcactgcgcgcctgcttcgtggccgtggccgggggcaag
caggtggcgttcctggcgcccaccacgctgctggccgagcagcactaccgcacgctgagc
gaccgcttcagcaagtggcccgtgaaggtggccgaggtctcgcgctttcgctcgggcaag
gagatcaccgccgccgtgaagggcattgccgacggcacggtggacatcgtcgtgggcacg
cacaagctgctcagcgaatcgacccagttcaagaacctgggcctgctcatcatcgacgaa
gaacaccgcttcggcgtgcgccacaaggaggcgatgaagcagttccgcgccgaggtggat
gtgctcacgctcaccgccacgccgatcccgcgcaccatgggcatggcgctggaggggctg
cgcgacctgtccgtgatcgccaccgcgccgcagcggcgcctggccatcaagaccttcgtg
cgcaacgaaggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatcgagaaccggcgccagaagctcgaa
gagatattgcccgaggcgcgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gagcgcgtgatgcgcgacttcgtggcccagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccacggccaacaccatcatcatcagccgcgccgacaag
ttcggcctggcgcagctgcaccagttgcgcgggcgcgtgggccgcagccaccaccaggcc
tacgcctacctgatggtgcccgacatcgacggcctgaccaagcaggcgcagcagcgcctg
gacgccatccagcagatggaggagctgggttcgggcttttacctcgccatgcacgacctg
gagatccgcggcgcgggcgaggtgctgggcgagagccagagcggcaacatgatggagatc
ggtttccagctctacaacgagatgctggccgaggcggtgaagcaactcaaggccggcaag
gaacccgatctgctcgcccccatgcaggccgccaccgacatcaacctgcacgccccggcc
ctgctgcccgacgactattgcggcgatgtgcatctgcgcctgtcgttctacaagaagctg
gccacggccaagaccggcgaccagatcgatggcctgctcgaagagatcgtggaccgcttc
ggcaagctgccgccgcaggcgcagacgctgatcgacgtgcaccgtctgcgcgtgctgtcc
gcgccctacggcgtcgtgaaggtggatgccgcccccggcgtgatcaccatcaccttcaag
ccgcagcccccggtggacccgatggccatcatccacctgatccagaaaaacaagcacatc
aagctggcgggcaatgagaagctgcgcatcgagcgcgagctgcccgaccccgccgcgcgc
gcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggccgaggcgcaggcc
gccgtccccgcctag
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