Diaphorobacter nitroreducens: BA022_06545
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Entry
BA022_06545 CDS
T04937
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BA022_06545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpy03021
]
BA022_06545
03019 Messenger RNA biogenesis [BR:
dpy03019
]
BA022_06545
Transcription machinery [BR:
dpy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BA022_06545
Messenger RNA biogenesis [BR:
dpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BA022_06545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASI68260
LinkDB
All DBs
Position
1445553..1446815
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEDLEIENGGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLSRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKKMKETKTNVEFFEAMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaacgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagac
ctggaaatcgaaaacggcggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgtgcaaaagccggcgagcagatttttgccgacggcgtgcttgagatcttgcccgac
ggcttcggcttcctgcgcagccccgacaccagctacaccgcgagcaccgacgacatctat
atcagtccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgag
gtgcgcacgcccaaggacggcgagcgttacttcgcgctgaccaagcttgactccgtcaac
ggcggcccgccggagcagaacaagcacaaggtgatgttcgagaacctcacgccgctgttc
cccaaggagcagatgcggctggagcgcgagatcaagggcgaggagaacatcaccggccgc
atcatcgacatcatcgcccccatcggccgcggccagcgcgcgctgatcgtcgcgcctccg
aagagcggcaagacggtgatgatgcagcacatcgcccatgccatcacggccaacaacccc
gatgtgcacctgatggtgctgctggtggacgagcgccccgaggaagtgaccgagatgcag
cgctcggtcaagggcgaaatcattgcatcgaccttcgacgagcccgccgcacgccacgtg
catgtggccgagatggtgatcgagcgcgccaagcgcctcgtggaactgaaaaaggacgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtggtgccctcc
agcgggaaggtgctctccggcggcgtggactccaacgctctgcaacgccccaagcgcttc
ttcggcgcggcgcgcaaggtcgaggaaggtggctcgctgaccatcattgcgacggcgctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcacgggcaac
tgcgaaatccacctgagccgccgcctctacgaaaagcgcgtgttcccggccatcgagctc
aacaagagcggcacgcgccgagaggaactgctgctggcacccgagatcctgcagaagacg
cgcatcctgcgccagttcatgtacaacatggacgagatcgagtccatggaactcatgatc
aagaagatgaaggaaaccaagaccaacgtggagttcttcgaggccatgcgccgcggcggc
tga
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