Diaphorobacter nitroreducens: BA022_07785
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Entry
BA022_07785 CDS
T04937
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dpy
Diaphorobacter nitroreducens
Pathway
dpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BA022_07785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpy03019
]
BA022_07785
Enzymes [BR:
dpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BA022_07785
Messenger RNA biogenesis [BR:
dpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BA022_07785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ASI68469
LinkDB
All DBs
Position
1705892..1707625
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AA seq
577 aa
AA seq
DB search
MTFEELKLAPTILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ
IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMM
EIERFTKQEIPVQVIDGFGPDEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARQEM
MERIRTNKAATGGQRGSRQGGGQGEGQQRAGGQNGSGGRGGNAGNAGRTAGPRDQQRPQN
TAGGRRRGGPAGAGNGGGNGGNRRFDDSQPRSENAHLGTQLGNIGIGPRHGSGRASQPDP
MRTSVDSMADRGRRGGFGRGNGGGGGGRGPRGGGFGR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaagctggcgccgaccattttgcgggccgtgcaagaacaaggc
tacgacaacccgacccctatccaggcccaggccatcccagccgtcctcgctggacacgac
cttctcgccggcgcacagaccggcaccggcaagaccgccgcgttcacgctgcctatgctg
caccgcctggccgaaggccaagccccacgcagccagtttggcggcaagggggtgcgcgcc
ctggtgctcacgcccacgcgggagctggcagcgcaggtcgaagaatccgtgcgcggctac
ggcaaatacctggatctgaactccaccgtgatcttcggcggcgtcggtatgaacccgcag
atcgaacgcatcaagcgcggcgtggacgtgctggtggccacccctggccgcctgctggac
ctgcagcagcaaggcttcatggacctgtccaccgtcgagatcctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctggcgctgctgccc
cagtccaagcaaagcctgctgttctcggccacgttcagcgacgacatccgtgaactggcc
aactcactgctcaagaacccgcagagcatccaggtcaccccgcgcaacaccacggtgcaa
cgcatcagccaggtgatccaccccgtggggcgcggcaagaagaagcaggtgctgctgcac
atcatccaggagcacgactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgagtacctgaccaagaacggcgtttcggccatggcgctgcatggcaac
aagagccagagcgcccgcacccaggcgctggagggcttcaagacgggccagatccgcgcc
ctggtggctaccgacatcgcggcacgcggcatcgacatcgacgacctgccgcacgtcgtg
aactacgaaatccccaacgtgcccgaggactacgtgcaccgcatcggccgcacgggccgc
gccggccgcgagggccatgccgtaagcctcgtctgcatggacgaggaaggtttcatgatg
gagatcgagcgcttcaccaagcaggaaatccccgttcaggtgatcgacggctttggcccg
gacgagggagagaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcg
ggcaagccgcccagccgcgaagtcatgcaggcagcggccaaggcggcacgccaggagatg
atggagcgcatccgcaccaacaaggcggccactggcggccagcgcggttcgcgccaaggc
ggtggccagggcgaaggccagcagcgcgccgggggtcagaacggcagcgggggccgcggc
ggcaacgcaggcaatgcaggccgtactgccggtccacgtgatcagcaacgtccgcagaac
acggccggtggccgccgccgcggcggtcccgctggtgcaggcaatggcgggggtaatggc
ggaaatcgccgtttcgacgacagccagcctcgcagcgagaacgcccacctgggcacgcag
ctcggcaacattggcatcggcccacgtcatggcagcggccgtgccagccagccggacccc
atgcgcaccagcgtggacagcatggcggaccgcgggcgtcggggcggcttcggccgtggc
aacggcggcggcggtggtggccgcggcccacgcggcggcggcttcggccgctga
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