Daphnia pulicaria: 124310834
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Entry
124310834 CDS
T08670
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124310834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124310834
03036 Chromosome and associated proteins [BR:
dpz03036
]
124310834
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124310834
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124310834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Axin_b-cat_bind
Motif
Other DBs
NCBI-GeneID:
124310834
NCBI-ProteinID:
XP_046630850
LinkDB
All DBs
Position
8:8327277..8334535
Genome browser
AA seq
1856 aa
AA seq
DB search
MFGQNRPTFGAPTSNTFGGFGTNTSTGFGQSSFGAKPTGTAAPTFQSTGFGSNTSMFGST
GTTTSQPSGGLFGTPTATFGAAQPTAGFGAPATNTGFGGFGGGTSGGSLFGAPAASTGMF
GSNTQQTAPSTGTTGMFGAATNTGFGAQAKPTFGFGATSTSSSLFGQPQSQPTQTTSLFG
QPTAQATPSTGTGLFGTSSFGNTIGGFGGTGGAITGTPVKFSPLTGTDSMMKNNVQTTIN
THHQCITCMKEYDNKSLEELRFEDYSVGRKGPTPGTAPQTGGLFGGTTTTTQSTPLFGQT
QQTPLFGTPAPTMGQPSLFGQPQQQQAQPSAFGAKPMGFGQPATSTQSSFGFGTPAPQQQ
QQQQPSLFGQQQQNKPFGSSIFGPQSTSQPTPAFGTQTPAPAFGFGAPQQTSQSFFNTPK
PAMGVQTSTAGFGFPQTTTTQSAGSNIFGAKPITGFGATPTPAFGTTPAQTTTPAFGGFG
TSGVTGTGLFTPGQTAFGVKPAGQTFGAVTSTPSNLGFGQTTMFGGASAANAKPSPFGGT
TFGSSGFGTTPSFGTATGGMGTGAPGSLFGNTSIGAPSTSMSFGTTQPTTGTSSSQLPIH
QYILTLSEISQSSDHPLFRKMLEPSGKTEELIKSSARTSLSNGAAPTPPQYRISPLPSNK
IRTKALLNGSSTGGGRRSIFEGLSDEEEGEENGAGSEAKTDFFVPRRSVKKLQLKAISLD
TTVDTDNKPDDDAEPIKSAPLITPSEERPVVLDSRPDLRVREELDDSLTVLKIRRPTVAF
LNQSAMLERSSMLDETGLGEGEVTVAEEISETVEEEIVPPHPAGIVLRRCGYSTMPTMED
LAIKGLDENGKCIITSFSIIRQGYGRIFFEGPLDVANLNLDEIVLFRHKEVTVYPDDSKK
PPEGEGLNRKAEITLDRVWPVDKSTGDYITNPERLAVLRYEERLARAAHRLQAKFIEYRP
ETGSWVFRVNHFSKYGLEDSDEESELPAAPPKAAAALPTTQGQAAQTTVIGAGMGLGGLS
ATIAQVTSMSMTFEEDMGVEDDLVIPRFADEFDDSVRVQSPPPVSTQLARTLGMPSQRVQ
IMKASFFDADNDYMQDVSMGIGSFFDQSVRMSQSIAPRKDMSRLFKDSPAQSPGSLFKSS
AIPGIQQPEDLNRSHVPMDQSFSAIAKLQQTTEIENLSTYVRLEHARNSEQCRKVVPRFA
TAEIPLSRSIIRDKFGIVMDASLFQNRQSRVGWGPDLQHLELSTTTRLSLLSVKTSDLKQ
NIDLEEDIFSVDSKNPYVVLLATYLNQTKATVVDGVPTLRPVPGSQAVGFLKAATESLLS
KLKNKGNPEALQLLNYMGKVWNLCIALWGPLDVEAGSHAETMARKETLTQWLEEATMETN
ITGLNEEEEVLTLLARHDVAGAARLAHKNGEYYLALLISQAGSSLAFKGMLQRQLNLWTE
NRADAFITQDRLRVFALLAGITVWETTEGKINTCEGMDWIKALAHHLWYVISPVGSITDA
LLEYEAACGISSDQNEAEIYASEPAPSYSQTSTSFRDLCFQLISLYCHRTTPLEKLVNPL
SHTWNVCENVLSWLLWQQLQALGYSHLSETAAAQLSIAFASQLENCGLWHWAIFVAMHLK
SSPSSVQAFVEDILGRHIGQEKDEQCERFLVEKLCVPSQWIEKCRAVKALYAFNPKLQAT
SLLAAGLYSQAHDVICDELAPEAILSESYQELEELLAPLADPERFSTIADWYLKGKVYWN
YITVVKAVDRILKQDNSSEKGMQLEKLTPDLTSLCNLVSSLPVPSAKHRLVRTEIAQKAA
YILKNVIGLQSVNASEEIVVPPRFVLPQLRQLPVTQDYSLSELNNVVRAYFLELKV
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atgtttggacaaaatagacccacttttggagccccaacatcaaatacttttggcggtttc
ggtacaaatacatcaacaggatttgggcagtcttcgtttggggcaaagccaactggaacg
gctgcaccaactttccaatctacaggttttggatcaaatacctcgatgtttggaagcaca
ggtactacaacaagccaaccctcgggaggtttgtttggtacacctactgccacttttgga
gcagcacaacctacagcaggatttggagcacctgcaactaatactggctttggaggattt
ggtggtgggacttcaggggggagcctatttggagcccctgctgcttcaactggtatgttt
ggatctaatacccaacaaactgccccttcaactggtacaactggcatgtttggagcagcc
accaatacaggatttggagctcaagctaaacctacatttggctttggagcaactagtacc
tccagtagcttgtttggacaaccccaatcccagcccactcaaaccacctcactttttgga
cagcccacagcacaagctacgccgtcaacgggtactggtttgtttgggacatcatctttt
ggtaacacaattgggggatttggtggtactggtggagccattactggtaccccagtaaaa
ttcagtcctctaacagggacagactctatgatgaaaaacaatgtccaaacgacaataaac
acacaccatcagtgtataacatgcatgaaagaatatgacaataaatctttggaagaactt
agatttgaagactactctgtaggacggaaaggaccgaccccgggaaccgcaccacaaact
ggaggattatttggtgggaccactacaactacccaatcaactccgttatttggacaaact
caacagacgccccttttcggaacaccagcacccactatgggacagccgagcttatttgga
cagcctcaacagcaacaagctcaaccttcggcctttggagcaaaacccatggggtttggt
caacctgctacttccactcaatcatcatttggtttcgggacgcctgcacctcaacagcaa
caacagcagcaacccagtctcttcggtcagcaacaacaaaataaaccttttggctcatcg
attttcggtccccaatctacgagccaacccactcctgctttcgggacacaaacacccgct
cccgcatttggatttggtgccccacaacagaccagtcaaagctttttcaacactccaaag
ccagcaatgggagttcagacttcaacagcaggttttggttttcctcaaacgacaaccact
cagtccgctggatccaacatcttcggtgcgaaaccaataactggttttggagcgacacct
acccctgcatttggaactactcccgctcaaacaacgacgccagcgttcggtggatttggt
acatcaggtgttactggaactgggttgttcacacctggacaaacggcttttggagtcaaa
ccagccgggcaaacatttggtgcggtgacatcaactccgtcgaatctaggattcggtcaa
actacaatgttcggcggggcatcggctgcaaatgcaaagccaagtccatttggcggtact
acctttggaagttctggctttggcactacacctagctttggaacagctactggtgggatg
ggtactggcgctcccggttcactctttgggaacacaagtattggagcaccctcaacttca
atgtctttcggaacgacgcagcctactactggaactagcagttcccagttgcctattcat
cagtatatcttgacgctaagtgagatttctcagtctagtgatcatcctctcttccggaaa
atgctggaaccgtcaggaaaaacagaagaattgatcaaatcaagcgcccgtaccagtttg
tccaacggggctgcaccaactcctcctcaataccgtatctcaccccttccctcgaataaa
atccgcacgaaagctttgcttaacggatcctcgactggtggtggaagacgttcgattttt
gaaggattgagcgacgaagaagaaggtgaggagaacggagctggatcggaagcgaaaaca
gatttcttcgtacctcgacgaagtgtcaagaaacttcaactgaaagccatttccctcgac
actaccgtcgatactgataataagccggacgatgatgctgaacccatcaaatcagcaccg
ttaatcacaccttctgaagaaagacctgttgtcctagactctcgaccagatcttagagtc
cgagaagaacttgatgatagtttgactgtgttgaagatacgtagaccaactgttgcgttc
cttaaccaatcagcgatgctagaacgcagtagtatgctggatgaaactggccttggagaa
ggggaagtcactgttgcagaggaaatcagtgaaacagtcgaagaagaaatcgtgcctcct
caccctgctggcatagttttacgtcgttgcggatattcgacaatgccgaccatggaagac
ttggcaatcaaaggattggatgaaaatgggaagtgtattattacttcgttttctattatt
cgtcagggctatggtcgaatatttttcgaaggccctttggatgtcgcgaacttgaatctg
gatgaaattgtattgtttcgccacaaggaagtgactgtataccccgatgattcaaagaaa
cctcctgaaggagaaggactaaatcgcaaagctgaaatcactttggaccgcgtctggcct
gtagataaatccactggagactacatcaccaatcctgagagattagctgttttgcgttac
gaagaacgacttgcccgagctgcccatcgcctacaagctaaattcatcgagtaccgacct
gaaacaggatcctgggtgtttcgagtgaaccatttctccaaatatggattggaggattct
gatgaagaaagtgaacttccagccgctccacccaaagccgctgctgctcttccaactaca
caaggccaggcagctcaaaccaccgtcattggtgctggtatgggattaggaggattgtct
gcgacgattgctcaagtcacctcaatgtcgatgacatttgaagaagatatgggtgtcgaa
gacgatttggttattcctcggttcgctgatgagttcgatgactcggtgcgcgtccagtca
cctccgcccgtcagtacgcagttggccagaacattgggcatgccttctcagcgagttcaa
attatgaaagcatctttcttcgatgccgataacgattatatgcaagacgtttccatgggt
attggaagcttcttcgatcaatctgtgcggatgtctcagtcgattgcaccaagaaaagac
atgagtcgcctcttcaaagattcccctgcgcagagtccaggaagcctcttcaagtctagc
gccattcccggaatccaacagccagaggaccttaataggtcgcatgtaccgatggatcaa
tccttcagtgctatagctaaactgcaacagactactgaaatcgaaaacttgtcaacttac
gtccgattggaacacgcccgaaattcagaacaatgccgaaaagtggtaccacgattcgcc
acagctgagattcccctgtctcgatccatcattcgggataaatttggaattgttatggat
gcttccttgttccagaatcgtcagtcacgtgtaggatggggtcccgatttgcaacacttg
gagctctcgaccacaactcgactctcactattatcggtgaaaacgtctgatctgaagcag
aacatcgatctggaagaagatattttcagtgttgacagcaaaaatccatacgttgtctta
ctagcgacgtatttgaaccaaaccaaggcaactgtagttgacggtgtgccaactctgcgt
ccagtaccaggatcgcaagctgttggtttcctcaaagcagccaccgagagcttactctcc
aaactgaagaacaagggcaatccggaggcgttgcagctgctcaactatatgggcaaagtt
tggaatctttgcatcgctctttggggtcctttggacgtcgaggcgggttcgcacgcggaa
accatggctaggaaagaaactttgacgcagtggctggaagaagctaccatggagacaaat
atcaccggtctgaatgaagaagaagaggtcttgactctactagctcgccacgacgttgct
ggcgctgctcgccttgctcacaagaacggcgaatactatctggcgttgctgatttcacaa
gcaggatcgtccctggctttcaagggaatgcttcaacgccaactgaacctctggacggaa
aaccgcgccgatgccttcatcactcaagatcgtcttcgcgtctttgccttattggctgga
atcaccgtctgggaaaccactgagggcaagatcaacacctgtgaaggaatggattggatc
aaggcattggcccatcatctatggtacgtcatttccccggttgggagcatcactgacgcc
ttgctcgagtatgaggccgcttgcggaatatcgtcagatcagaacgaagctgaaatctat
gccagtgagccagctccttcctattcacaaacatctacttcgttcagagacttgtgtttc
caactgatttcactctactgccaccgtacgactccgctggaaaagttggtcaatcctctg
agccacacatggaacgtatgcgaaaatgttttgtcttggttgctctggcaacaactccaa
gccttgggctactcacatctttcggaaactgctgctgcccagttgtcgattgcgttcgct
tcccagttggaaaattgtggcctctggcattgggccatttttgttgcgatgcatctgaaa
tcgtcaccgtcttccgttcaagcgtttgtcgaagacatcctcggccgtcatatcggacaa
gaaaaggacgagcagtgcgagcgtttcttggtcgaaaaactttgcgttccgtctcagtgg
atcgagaaatgtcgagcagttaaggcgctctatgcgtttaatccgaaactgcaggccact
tccctgcttgccgctggactttacagccaagcccatgacgtcatctgtgatgaacttgct
ccggaagctatcctgtctgaatcctatcaggagttggaggaactcttggctcccttggct
gacccggaacgattcagtacgattgccgattggtacctaaagggcaaggtttattggaat
tacatcacagtcgttaaagccgtagatcgaattttaaagcaggataattccagtgaaaag
ggaatgcaactagaaaaattaacaccagacttgacatctctctgcaacttggtgtcctct
ctacccgtaccctccgccaagcacaggctggttcgcacggaaatagcccagaaagcggct
tacattttgaaaaacgttatcggactccagtcggtcaacgcatccgaggaaattgtggtc
ccccctcgttttgtcctgccgcaactccgccagcttcctgtgacgcaggattactcgctc
tcagagcttaacaacgttgttcgtgcgtactttctcgaacttaaggtttaa
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