Daphnia pulicaria: 124310884
Help
Entry
124310884 CDS
T08670
Name
(RefSeq) mutS protein homolog 4-like isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpz03036
]
124310884
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Meiosis-specific proteins
Others
124310884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
HRI2_3H
AAA_19
AAA_29
AAA_27
Motif
Other DBs
NCBI-GeneID:
124310884
NCBI-ProteinID:
XP_046630958
LinkDB
All DBs
Position
8:complement(9912879..9936152)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSSLKRMRPTGAGGGEQQQQQEEEGGQSELSDPSSSTGAANFPSSLATPFTTTSSVRPSG
RTTNNDQSSRFDNLSRPSSSIQQEGGRSTATAAAASKWSDGVVGGSGSRPSSAVGPTTTS
SSVFNLLFTPGSSSSTATDSRVDTSQGAFARPSGRAPRSSSRSSLAPTPAATNLFAALTN
ETPRLLAAPYFSPLPATRQQSPQQSPQLFGKSPYANSLPPPTPTPSAATPGAQHRGPPVI
TPRLTAGGGGGRLTVGTPSVSATPRTGQSRPRRDDNVIVGLVHGRGFARNEVGLAVINLT
ACELHLCQMTDSHGFVKTLTKMNLFRPTEVLMPDTALAPGSPSPLAQAISRFDCDIVMTA
ANRGAFNDAEGIERVQKLAVVDHLNILVLIEQKYYALAAVAALMAHLENNLNIMFAPGTL
RIYYSGTDKTAIIDSETANRLEVVNSLNPTGGPSLLSALNSCQTAAGKRLLRSNLLEPMT
DVEAIRLRLDAVEELASRPTDLHQPIKEILSRFVDVERAVNQCVVMPKNPSPSFVEQRIN
AVVALKHILSLVSPLGSALAKANSPLIVALAKELASIDDEALLSCIQDVLDERVKPVKGK
IGMQRQRFRSVKTGVDLMLDVCRRTHSDLETEMEEYVEELSQKYQMPLTLANTAQRGYHL
QQTLGQPRKKGETNYQPPPPPQLPPVFVCMKKQGNIIAFTTQHLLVSNERIKSVEKDIEK
ITNVVIEDLLSKTRSDIGSLYKLREIVCQLDVIVSFAQVSSAGGFCRPTFSNELVIRSGR
HPILDHFSPSALVSNDTEMTVESNFHVITGANMSGKSTYIRQVMLLQIMAQIGCFVPASS
ASFRIADQMFSRLGTHDRLENNASSFSLEMTEMNYIVRNAGPGSLVIIDELCNETAADQG
SAICWSICEALMMTEAWVMIATHTPLITKLQDLYFNVTNYHMEVLEEEREDGRSKLNYTH
VIRPGVTQLENYGMKLACMVAFPPEILTRAKELIPILSANLKPLPKTTFDFKMNKLNYAL
HKKLVDIGRRMDSLPDQTFLMEMQRVRQAYTDELNKIMEEHEAETSAN
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgttgaagcggatgagaccgacaggagcaggaggaggggagcagcagcagcag
caggaggaggagggcggtcaaagtgaattgtcggatccgagttcctcgacaggagcggcg
aatttcccgtcgtcgttggccactcctttcaccaccaccagcagcgtccgtcccagtgga
aggacgacaaataacgaccagtcgtctcgtttcgataatctctcccgtccgtcttcatcc
atccaacaagaaggaggacggtcgacggcaacagcagcagcagcgtccaaatggagtgat
ggggttgtcggtggtagtggttctcggccgtcgtccgccgttggccccacaacgacttcc
agcagcgtcttcaacttgcttttcactccgggcagcagcagctcgacggccactgacagt
cgtgtcgacacaagtcaaggagcctttgcccgacccagcggacgggcaccccggagctcc
tctcgctcgtcgcttgcaccaacgccggccgctacaaatttattcgccgctttgacaaac
gaaacacccagactgctggccgctccttacttctcacctcttccggcgacccgtcagcag
tccccacagcagtcccctcagctgtttggcaaatcaccctacgccaacagtttaccacca
ccgacaccgacaccgtcagcagcgactcccggtgctcagcacagagggccgccagtcatc
acgccacgattaacagctggaggaggaggaggtcggttgactgtcggaactccttccgtc
agcgccacacctaggaccggccagtctcgcccgcgtcgcgatgacaacgtcatagtcgga
ttggtgcacgggcgtggattcgctcgtaatgaagtcggattggccgtcattaacttgacg
gcctgcgagcttcacttgtgccagatgaccgattcccacggcttcgtcaaaacgctgact
aaaatgaatctattccgcccgacggaggtgttgatgccggacacggccctggctcccggt
tctccgtcgccgttggctcaagccatcagccgatttgattgcgatatcgtcatgactgcc
gctaatcgcggagctttcaacgacgccgaaggcatcgagcgcgtccagaaattggccgtc
gtcgatcacttgaacattctcgttttgattgagcaaaagtattacgccctggcagctgtg
gctgccctaatggcacacctggaaaacaatttgaatatcatgtttgctcctgggacgctg
aggatctactacagcgggacggataagacggccatcattgattcggaaacggccaaccgt
ctggaagtggtgaacagtttgaatccaacgggcgggccgtctctactttcggcgttgaat
tcgtgccaaacggcggctggtaagcggctactccgctcaaatttactggaacccatgacg
gatgtggaggccatccgtctacgtctggatgccgtcgaggagcttgcgtcacgtcctacc
gacctccatcaacccatcaaggagattctgtcccgtttcgtcgatgttgaacgagccgtc
aaccagtgcgtcgtcatgcccaagaatcctagtccgtcgttcgtcgagcaaaggatcaac
gccgtcgtggccctcaagcacatcctctctcttgtgtcgccacttggatccgccctggct
aaagccaacagcccattgattgtcgccttggccaaagagctggccagcattgatgatgag
gcgctgctgtcgtgcattcaggacgtgttggacgagcgagtgaaacctgtcaaaggcaaa
atagggatgcaacgccagcgattccgcagcgtcaaaactggcgtcgatctcatgctggat
gtttgtcggcggactcacagcgatctcgaaacagagatggaagagtacgtggaggagctg
tcacaaaagtaccaaatgccgctgactttggccaacacggcgcagcgcggctatcacttg
caacagacgctgggccagccgaggaagaaaggagaaaccaactaccaacctccgccacct
ccgcaactgccgcccgtctttgtctgcatgaagaagcaaggcaatatcatcgccttcacg
acgcagcatctcctggtgtctaacgaacgcatcaaatctgtcgagaaggacattgagaag
atcaccaacgtggtcatcgaggatctcctgtccaagacgcggagcgacattggatccctg
tacaaactgcgtgaaatcgtttgccaactggacgtgattgtttcgttcgctcaagtcagt
tccgccggcggattctgtcgtcccacattcagcaatgagctcgtcatccgttccggtcgc
catccgatcctggatcacttttctcctagcgccctcgtctccaacgacacggaaatgacg
gtggaatccaatttccatgtcatcaccggagctaatatgagtggcaaaagcacctacatc
cgccaagtgatgctactgcaaataatggcccagattggttgttttgttccggccagcagc
gcttcattccggattgctgatcaaatgttctcccggctcggcactcacgaccgtttggaa
aacaacgcctcctccttctctctcgagatgacggagatgaattatattgtccgcaacgcc
gggcccggatctttggtcatcatcgacgagttgtgcaacgagacggccgccgatcaaggc
agtgccatctgttggagcatttgcgaggccctgatgatgaccgaagcttgggtcatgatt
gcaacacacacgccactcatcaccaaattgcaggatctctactttaacgttacaaattac
cacatggaagtcctagaagaagagcgcgaagatgggcgatctaagctgaattacactcat
gtcatccgacctggcgtcacgcaattggagaattacggcatgaaattggcttgcatggtc
gcgttcccgcccgaaatcttgaccagagccaaggagctgatcccaattctttctgccaat
ttgaagccgctgccgaagacgacctttgacttcaagatgaacaagctcaactatgccctg
cacaagaagctggtggatatcgggcgccggatggattctctgcccgaccagaccttccta
atggagatgcagcgtgttcgccaggcttacacggacgagctcaacaagatcatggaagag
cacgaagccgagaccagcgcaaactga
DBGET
integrated database retrieval system
