Daphnia pulicaria: 124311097
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Entry
124311097 CDS
T08670
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
dpz
Daphnia pulicaria
Pathway
dpz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124311097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dpz03009
]
124311097
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124311097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_NWD2_C
VPS8_N
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
WD40_like
WDR54
Motif
Other DBs
NCBI-GeneID:
124311097
NCBI-ProteinID:
XP_046631357
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Position
8:complement(10625719..10628047)
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AA seq
545 aa
AA seq
DB search
MASFKKTQIRSLPKIGQKVTADTLYWRKLNFPVTVKEFGPIDYIDVMPIEPYFIAVSSAA
KVQIYNPITHQVHRHFTRFKEAAYGASIRSDGKLVVAGCDEGHIKLFDIGSKSLLRIFKG
HKGPVHRCKFTADNVHVVSFSDDKSVALWDLPSETEIIKFSEHSDYVRAGCVSSISSDLF
LSGSFDHTVKLYDARSPTGSTISVDHGSPVESVLMYPGNSIFVSVGGTELRVWDMLAGGR
LLARVSQHHKTITCLHLASDGKRLVTGGLDRHAKIYDVQSYQVVHTLDFPSPVLSLGITP
DDFTVVAGMANGLISMQHRQTPAEARALIPKQSLKDQKKSQTTYRFRLNADFRNVNRTFN
PATDVEVATKNDNSLVSRYDMFLRKFQYSKALDTVLSKYIRKKKPAITVGVMHELIRRNG
LKSALAGRDDSSLSIILTFLARNINDPSHSKIIIQVANTLLDVYENSCLTPQSEKLFLHL
QEHVNREVEYMKHLMEIEGMLHILLASTTTQTRRGPVNIGQGPPVKVMLPSAAAAANATM
VYNVG
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttcaagaaaactcaaattagaagtttacccaagattggacaaaaagttacc
gccgatacattgtattggagaaaacttaactttcccgttactgtcaaagaattcggaccc
attgactacatcgatgttatgccaatagagccctatttcatcgctgtttctagtgctgcc
aaagttcaaatatataatccaatcacacatcaagttcacaggcatttcacacgattcaag
gaggcagcttatggtgcttccataagatcagatggtaaactggttgttgctggatgtgat
gaaggacacatcaaactttttgacattggttcaaaatcacttctgcgaatatttaaggga
cataaaggacctgttcaccgctgcaaattcacagcagataatgttcatgttgtcagtttt
tctgatgataagtctgttgccttatgggaccttcctagtgaaactgaaattattaaattc
tctgaacattcggattatgtgagagctggatgtgtttcaagcatcagctcagatcttttt
ctttctggttcatttgatcatacagttaagttgtatgatgctaggagtccaactggtagc
actatttcagttgaccatggttcccctgtggagagtgtgctcatgtaccctggcaattct
atttttgtttctgttggtggtactgaacttagagtttgggacatgctagccggtggtcga
ttgcttgcaagggtctcgcaacatcacaaaaccattacttgcttacacttggcatcagac
gggaaacgacttgtaactggtggtctcgatcgtcatgctaaaatctatgatgttcagagc
tatcaagtggtccatactcttgacttcccctcacctgtacttagcttgggaatcacgcct
gacgattttactgtggtagctggaatggctaacggtttaatctcgatgcagcacagacaa
actccggctgaagcgcgagctttgatcccaaagcagtccttgaaagatcagaaaaagtca
caaactacatatcgtttccgtttgaatgctgatttccgaaacgtcaatcgaactttcaat
cctgcaactgatgtcgaggttgccacaaaaaatgacaactctttagtgtctcgatatgac
atgtttctccggaaattccagtacagcaaagcattagatacagttttaagcaaatatatt
agaaaaaagaaacctgctattactgttggggtgatgcacgaattaataagacggaacggc
ttaaaatctgccctggcaggtcgtgacgatagctcattgtcaatcattctgacatttttg
gctcgaaacatcaatgacccgagtcattcaaaaattataattcaagtggcaaatactttg
ctagacgtatacgagaacagctgtttgacaccccaatcagagaaactgttccttcatcta
caagagcacgttaaccgagaagtagagtatatgaagcatttaatggagatagaaggcatg
ctgcacattttactcgcctcaactaccacgcaaacaagaagaggtcccgttaacatcgga
cagggtccccctgttaaagtaatgcttccgtctgctgctgccgctgcgaatgccaccatg
gtttacaacgtcggataa
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