Daphnia pulicaria: 124312449
Help
Entry
124312449 CDS
T08670
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
dpz
Daphnia pulicaria
Pathway
dpz04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124312449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dpz03000
]
124312449
Transcription factors [BR:
dpz03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
124312449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
Ank
Ank_2
RHD_DNA_bind
Ank_4
Ank_3
Ank_5
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
124312449
NCBI-ProteinID:
XP_046632924
LinkDB
All DBs
Position
1:complement(19503179..19510760)
Genome browser
AA seq
880 aa
AA seq
DB search
MHHPIGSSPYSPELTHSSSPQICQSFFRGNFPMMCTSSNSTYVEYSLSSTVIRPGRPSPC
LFILNQPQGKFCFRYASEMTGTHGCLMAESKEWNKKQNIRVQLEGCPDREAIIRCTFVTN
TSIPVPHAHRLGGKENSNKDNGNEGEYQEIVVSAKNEWTATFSGLMIIHTLKKQVPEVIL
RRLINEMGNAPINRNQRQQLKDEADKIANTMDLHSVKLKFEAFVEQNGFREQICPPQYSQ
AIHNLKSTHAGDLRIVRIDKVCGCCTGQEEIFIFVEKVNKKDIKIRFFETDENEQEIWHA
FADFSELDVHYQFAIAFKTPAYQDPNIQSDVTVQFQLYRPSNQSTSEAKSFTYTPRERVG
AKRPYPDRPSTSPNIVKDIGQADWNIFEEFFNFDTYGSDASGSTIDALTPQLKHMKISPK
KSPFSDLKPHKINQLVSSPVTTSKLMSAYSMNMARAIRWYATTGDLGHILTRMRHLMAMQ
SEDGDNALHDALIHNQTDVVRAILHAASFHNTELNFINAQNNANLTPLHISVLKNQTEAT
ALLLQSGANPGLVDANGNTPIHLAAMDKHLIDCLQLLLNTSNWKPAHALKLNTINYAGLT
PLHIAVNAMNVKSVELLLAKGADVNCHETKRGRSALHIAVKKQSEEMVALLLSCTSLNVN
MQSYDGMTALHLAVLDELDQICSLLIKSGADPSILNYVNSSASSENEECDESDPEHLLGD
GSVEKGQSSLDLAQCNLTIAKVLRDGTHSSTSLAPCETNFLVMDEDERKSTASDATSNSR
VLDSGIDLMTSKELPKELDKRIISDLANILDSPNKEWEQLADSLDLLLSMRTVLDKQQSP
TTYLLSNMDLWEVSTQVVLEKLHFLKFTDAATLLENYLAT
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgcatcacccaattggtagcagcccttactcacctgaattaacacattcctcaagtcct
cagatatgccaaagcttcttcagaggaaactttcctatgatgtgtacctcatcgaacagt
acctacgtggaatattctctcagttcaactgttatcagaccaggcagaccatctccatgt
ttatttatacttaatcaaccacagggaaagttttgttttcgttatgcctctgaaatgact
ggaacacatggatgtcttatggctgaaagcaaggaatggaacaaaaaacaaaatattcgc
gttcaattggaaggctgtccagatcgagaagctattattcgttgtacatttgttacaaac
acttcaatacctgttccacatgctcatcgtcttggagggaaagaaaactccaataaggat
aatggtaacgaaggagaataccaagaaatcgtagtctctgctaaaaacgaatggactgca
actttctccggtttaatgatcatccacacattgaaaaaacaagtccctgaggtaatttta
aggcgtttgataaatgaaatggggaatgcacccataaatcgtaaccaacggcaacagttg
aaggatgaagcagataagatagccaatacaatggatcttcactcagttaaactaaagttt
gaagcctttgtggaacaaaacggttttcgtgaacagatctgcccacctcaatattcccaa
gctatccacaatttaaaaagcactcatgctggagacttacgcattgttcgaatagataag
gtctgtggttgctgtacgggacaggaagagattttcatcttcgtcgagaaagtcaataaa
aaggacatcaaaattcgtttcttcgagacagatgaaaacgagcaagaaatctggcatgca
tttgccgacttttctgaattggatgtgcattatcaatttgctatcgcattcaagactccc
gcttatcaagatccgaatattcaatcagatgtgactgttcagttccagttatatcggccc
agcaatcaatctaccagtgaagccaaatctttcacctatactccaagagagagagttggt
gcaaagcgaccatacccagataggccgtcgacatcacctaatatagtcaaagatattgga
caggctgattggaacatttttgaagaattttttaattttgacacttatggctcagatgct
tctggatcaactatcgatgcacttactccacaactaaaacatatgaagatatcaccaaag
aagtctcctttcagtgatttgaagccccataagattaaccaattagtttcatcaccagtt
acaacatccaaattaatgtctgcttattcaatgaacatggcccgggcgattcgctggtac
gccacgacgggtgatttgggtcatattttgactcgtatgcgacatcttatggcaatgcaa
agtgaagatggagacaatgcactccacgacgctcttattcacaatcaaaccgatgttgtg
cgcgctatactgcatgcggcttcctttcataacacagaactgaatttcatcaacgctcaa
aataatgcaaatctgacaccattacacatttctgttcttaaaaaccaaaccgaggctaca
gctttgcttttgcaaagcggagcaaaccctggattggtggatgctaacggaaatacccca
attcatcttgctgcaatggacaaacatctcattgactgtcttcaactacttttaaatact
tccaattggaagccagcccatgctctgaagttgaatacgataaattacgctggtcttact
cctttacacattgcggttaacgcaatgaacgtgaaaagcgtagaattgctacttgccaaa
ggagctgatgtcaactgtcatgaaacaaagcgcgggagatcagctttacacattgccgtt
aaaaagcaatcggaagagatggtggcgttattgctgagctgtacatctttgaatgtgaat
atgcaaagctatgatggaatgactgctttacatctggctgtgttggacgaacttgatcaa
atctgtagtttattaataaagagcggggcggatccctcaattcttaactacgtgaattct
tccgcatcgtcggaaaatgaagaatgtgacgaaagtgaccccgaacacttgttgggagat
ggtagtgttgaaaaaggacaaagttccttagatttggcacagtgcaatttaacgatagct
aaagtgttacgtgatggtacgcactcgtcaacgagcttggctccctgcgaaactaatttt
ttggtgatggatgaagatgagcggaaaagtaccgcatcagacgctacttcaaatagtaga
gttttggactcgggcatcgatttgatgactagcaaagagttgccgaaagagctggacaaa
cgtatcatcagtgacttggctaacatattagattctcccaacaaagaatgggaacagttg
gccgatagtctggatctcttattgagcatgcgaaccgttttggacaagcagcaaagtcca
accacgtatttgctatcaaatatggatctttgggaagtgtcgactcaggtcgtattggaa
aaactacatttcctcaaattcacagatgctgcgacgctgcttgaaaattatttggcaact
taa
DBGET
integrated database retrieval system
