Daphnia pulicaria: 124312812
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Entry
124312812 CDS
T08670
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
dpz
Daphnia pulicaria
Pathway
dpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124312812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124312812
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124312812
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
MUM1-like_PWWP
AAA_29
Motif
Other DBs
NCBI-GeneID:
124312812
NCBI-ProteinID:
XP_046633241
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All DBs
Position
9:4260715..4265119
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AA seq
1309 aa
AA seq
DB search
MSKSSQKNTIFNYFVKSPTAAGSTTPSRNTNAASASSPTFASPSTKTTPSRAALTPSNKD
TPKLKIKRGLSRTPIPQKEGYELGSLVWAKLDGFPWWPSLVCLHPVKKVEKEGGKIHVQF
FDNPPTRSWIHMKFARPYTGSQNFNSLGVSKPKDSDWDNGCKEADNALPMSVEERLKLVV
ELLPSDEENSISEESTPKTATKTSKKAEGPKPKRRRILVPGDSNEDEASEEEYKPMAVDS
SESEVEESLIEEDQENPISEEEVEEESPVKRKRKLPVANTKSGLNTPSNLKSFVCDSPST
ISNSTKKKLSDFSCRDADGVCDSQSEGRKFSHLTYEFLKPAIIRDGQRRRPDDPDYDPRS
IYIPDSFKQSLTPAMRQWWEMKTNNFDVILFFKVGKFYELYHTDALIAVQELGIILMKGD
HAHCGFPERGFAKYSSQLIEKGYKVARVEQTETPEMMTERCKRMSRPTKFDRVVEREVCQ
ITSRGTRTYNAIEGDNWEVEHHFLMALWEKSGSEAAGGKVEFGVAFVDTSIGSFQLGQFE
DDRYRSRLSTLLTRYNPVEIISAKRGVSNDTTQVWNAACPNALHEMVSSNAECWDPAKTL
RSLAESDYFKVNGDLDWPEGIRPLLDDSSSLGLTAKEESELAIRALGALHWYLKECKLDQ
ELLSRRSFQIYYPIDEEPQENAIFGSHMVLDGMTLRNLDVLVNSSTGTTTGSLLERLNRC
NTAFGQRMLRHWLCAPLCQQEAIDDRLDAVEYLLSNTSAIEEVRKILKSLPDLERLVNKI
HSQGSSLKAKNHPDSRAIFFDAPIYSKKKITDFLLTLEGFRSAQKVEEYFRESTIISKLL
RQSVKLASQGGEFPDMDEELEFFRLAFDHQQAAKEGTMVPRPGVDKQYDQALERIAEVQA
DAEKYLLDQKRHFGGKVSFVGTDKKRFQLEVSEAASSRANHKYELQGQRKGFKRYYTNES
RVLIQQMLTAEEQRNLALKDISRRIFEQFDNHHLLWEKAITCLAVLDVVLALTAFAADQK
VCRPRIIPPGSNQRPFLRLIQGRHPAHSQQFANSEFIPNDVTIGSGVVEQSDSQVDADHS
LTLVTGPNMGGKSTLMRQVGLCVILAQMGSFVPAEEFELTPVDRLFTRLGANDHILGGES
TFFVELSETAAILKHATLHSLVLLDELGRGTATFDGTAIAYSVVDHLARRQCRTLFSTHY
HSLVHDLTSHPQVRLGHMACMVENDEEVDDPSQENIIFLYQFVDGACPKSYGFHAARLAG
LERSIISRGFQQAKRMESKMLSVELFRDLFEKQSPKLPVDFQPNWNCLL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagtcatcccagaaaaatactatattcaattacttcgtgaaatctcctactgct
gctgggagcactactccttcacgaaacactaatgctgcatcagcttcttctccaacattt
gcgagcccttcaactaaaacgacacctagtcgtgcagccttgactccttccaataaggat
acacctaagctgaagattaaacgagggttgtcccgaactcctataccacaaaaagaaggt
tatgagcttggcagtcttgtttgggcaaaacttgacggttttccatggtggcccagcctt
gtatgtctccatcctgtaaagaaagtagaaaaagaaggtggaaagatacatgtacagttt
tttgacaatccacccacgagatcgtggattcacatgaaatttgcaagaccttatacagga
agccaaaatttcaactcacttggtgttagtaaacctaaagacagtgattgggataatgga
tgtaaagaagcagacaatgctcttccaatgtctgtagaagagagattgaaattagtagtt
gagctacttccatctgatgaagagaacagcataagtgaggagtctacaccaaaaactgct
actaaaacatctaagaaagctgaaggaccaaaacccaagagaagaagaattttggtacca
ggtgacagcaatgaagatgaagcttcagaagaagaatacaagccaatggctgttgacagc
agtgagtctgaagttgaagagagtctaattgaagaagatcaagaaaaccctatttcagag
gaagaagtagaggaggagagtcccgtgaaaaggaaacgtaaattaccagttgcaaatacg
aaaagtggtttaaacaccccatctaatttgaagtcattcgtctgtgattcgccttccacc
atcagtaacagtaccaaaaagaagctgtctgactttagttgcagagatgctgatggagtc
tgtgatagtcaaagtgaaggaagaaaattctcacatctgacttacgaatttttgaagcca
gccattattcgtgatggtcaaaggcgccgtccagatgatcctgattatgacccgagatct
atatacattcccgattcgttcaaacaaagtctaactccagctatgcgccagtggtgggaa
atgaaaaccaacaattttgatgtcatcctcttctttaaagttggcaaattttatgagctg
tatcacacagatgccctgatcgctgtccaagaattgggtattatcttgatgaaaggagat
cacgctcactgtggatttcctgaacgaggcttcgctaagtactcctcccaactaatcgaa
aagggttataaagtagctcgggtggaacagacagaaacaccagagatgatgacggaacga
tgcaagcgaatgtctcgtcccactaaatttgaccgagtcgtagagcgtgaagtatgccag
attacgtcacgtggaactcgaacctacaacgcgattgaaggagacaactgggaggttgaa
caccatttcttgatggcgctgtgggaaaagagtggatcggaggcagctggtggaaaagtc
gaatttggtgtggcattcgttgatacatcaattggtagttttcaactagggcagtttgaa
gacgatcgctatcgttcccgtctttcgacgttgctaacccgttataatcctgtggaaatc
atctcagccaagcgcggagtctcaaacgatactacccaggtgtggaatgctgcctgccct
aatgctcttcatgagatggtcagctccaacgccgagtgctgggatccagcaaaaactctc
cgctctctagccgaaagtgattactttaaagtgaatggagaccttgattggccggaaggc
attcgcccgttgctcgatgacagtagtagccttggcttgactgccaaagaggagtctgaa
ctcgccattcgagcattgggagcccttcattggtatctgaaagaatgtaaactggaccaa
gaactgttatctcgccgttcattccaaatttactatccgattgatgaagagccacaagaa
aatgccatttttggttcccacatggtgctggatgggatgacattacgcaacttggacgtt
ctagtaaactcttccacgggtaccacaacaggatctttattggagcgactcaaccgctgc
aacacagcgtttggccaacggatgcttcgccattggctatgcgcaccactttgtcaacag
gaagccatcgacgatcggctggacgcagtcgagtatcttttgagcaacacatcagcaata
gaagaggttagaaagattctaaagtctcttccggatttggaacgattagtgaacaaaatc
cacagtcaaggcagttcactcaaagctaagaatcaccccgacagccgcgctattttcttt
gatgctcctatttacagcaagaaaaaaataaccgactttttactcacattggaaggcttc
cggtcggcccaaaaagttgaagaatactttcgcgaatccaccattatttcgaagctgctc
aggcaatcggtgaagctagcgagtcaaggcggggaatttcctgatatggacgaagaactg
gagtttttccgccttgcttttgatcatcaacaagctgccaaggaaggcacgatggttcct
cgaccaggtgttgacaagcaatacgatcaggccttggagcggatagccgaggttcaagca
gacgccgagaagtatctacttgatcaaaagcgtcactttggaggaaaagtatcatttgtt
ggtaccgacaagaagcgttttcaactggaagtttctgaagcagcttccagtcgtgcgaat
cataaatacgaattacaaggtcagcgtaaaggattcaaacgatactacactaacgaatct
cgtgttttgattcaacaaatgttgacggctgaagaacagcgaaatttggccctcaaggat
atcagtcgacgaatttttgagcagtttgataatcaccatttgctgtgggagaaagcaatc
acgtgtttggctgttctagatgttgtcttggctctcacggctttcgctgctgaccagaaa
gtctgccgccctcgtatcattcctccaggaagcaaccagcgtccctttttgcggctgatc
caaggacgccatccagcccactcccaacagtttgccaacagcgagttcattccaaacgac
gtcaccattggatctggcgttgtggaacaatccgattcccaggtcgatgccgatcattcg
ctcaccttagtgacgggcccaaatatgggtggtaaatcgacgttgatgcgtcaagttggt
ctttgcgtcattctggctcaaatgggatcatttgtccctgctgaagaatttgagctgact
ccagtggaccgactatttacgcgtttgggagccaacgaccacatcttgggtggagaaagc
accttctttgttgaactgagtgaaactgctgcgatcctgaagcatgcaacgctacattcg
cttgttttgctggatgaacttggaagaggcactgctaccttcgatggaacagctattgca
tattctgttgtggatcacttggctcgccgtcaatgtcgcactttattttctactcattat
cacagcttggtccacgaccttacttctcaccctcaagttcgtttaggccatatggcgtgt
atggtggaaaatgacgaagaggtggacgaccctagccaagaaaacataatttttctttac
cagtttgttgatggagcttgtcccaagtcttatggattccacgcggcacgactggctgga
cttgagaggagcatcatttcacgcggcttccaacaggcgaaacgtatggaatcaaaaatg
ttgtctgttgaattgtttcgtgatctgttcgaaaaacaatctcctaagttacctgtcgat
ttccagccgaattggaattgtcttttgtaa
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