Daphnia pulicaria: 124313730
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Entry
124313730 CDS
T08670
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124313730
03036 Chromosome and associated proteins [BR:
dpz03036
]
124313730
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124313730
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124313730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_7
YqgF
HTH_44
HHH_3
Tex_YqgF
S1
Spt6_S1
Tex_central_region
Tex_N
HHH_9
S1_RRP5
DUF3305
PWI
zf-CCCH
HTH_Tnp_Mu_2
Motif
Other DBs
NCBI-GeneID:
124313730
NCBI-ProteinID:
XP_046634498
LinkDB
All DBs
Position
9:652342..656621
Genome browser
AA seq
1252 aa
AA seq
DB search
MIVENPEALKTWLVAALASLCGEDQDHVEIAEIVLAQAKKKKTNSDLEKAMWKKLLADYL
GEKTGEFIKKFFVTLETKSYLQSNPGPSTPRIESTTASEHEVGHFTDFDEKIRKTDMPER
MQLRNVPITSVEEGSAELDLEAEWIHKHAFSKASISNQDGTADGREDVIKGPKTVEKIRK
ALELIRNQHFEVPFIAFYRKEYVLPELSVYDLWRVYKFDEKWTQLQTRKNNMMRLFQKIQ
KYRSEKPNENVRVLKDEDIDRLRMVQSIEELSDVYNHFTLYYGNDVLAMREEYRRNSAAR
QRLNEDGELMDADDMKEDLHDPDEDLYSRGASAGLDGLLRKYGLSRIEQFADNYQRHDIH
QSQTTKDPCDVALEYAFSKFPNVAEFLKAANYMLAVQIAKEPSVRKFVRESFFERARFDV
IPTKEGLKKIDEMHNLYSLKFLKNKPVWDLVNDQFLRLWVAEQDKLLTIVFPTKIEGAIT
ASYVDEIIKALLTRDESSKLVQELNVQRKEIIDLALSKFVLPSMVKELKAKLLNEAQEFV
KRACCQQLYNCLNVAPYEVNFGDKEDKDTTDGIRILGLSYGEDQIVYGCLIKGDGECSNQ
IRLEHILKRKNAEKEKDRTDKEKNLKMLKYFISSGMPHAIAVSAESQEATQLVEDSRSII
SELVKEKKCPTIDVFLVDNSFAKVFAKSTGAESEFPQRPLLLREAISIARQFQDPLVEFS
QLFNSNEDIVNIKFHSMQDQLSKKELLEGLYLEFVNRTNEVGVDINRAIKHPRTAHLIQF
ICGLGPRKADQLIQTLLKNKNQRLENRTQLVTACHMGPKVFTNCAGFIKIDTHLSGDGAE
PQVELLDGSRVHPERYDWARDFAVAALKYHGEKYVDPGGAVKKILEAPQKLEGINLDVAV
DQCERQGFGNARNTLEHIRSELLHLYKDGRPSYQAPSHEEDIFNMITKETPQTFYKGKMV
LATVTGFLRRKPKREELDKANPKKNETTGLWQCPFCLQNDFTDLSGVWNHFDAGSCSGQA
IGVSICLENGLSGFLPMKCLSDSKITNPEERVRVGHTIHCRITKIDVKRFSVDVTSKASD
LDDINGVWRPPKDAYYDGPAEKAMLKAEEDAKKLRQKNTESIIARPASTTPSNTTERRSG
GPSSRSRSRSPNRGRTARTIGSSSRSRSPLHQSSPLRRPSPRLPAFPPVGAPAPALIVAP
PWFHNMQCPHFKDHSQCPRGNLCPYVTGPYQPDLQLMEALNMPGRDPPQNPQ
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtagaaaatccagaggccctcaaaacttggcttgtggctgccctggcctcattg
tgtggtgaagaccaggatcatgtagagattgccgagattgtgcttgcccaagctaaaaag
aagaaaacaaattctgatctggaaaaggccatgtggaagaagcttttggcagactacctt
ggtgagaagacaggagaattcatcaaaaagtttttcgtcactttggagaccaaatcatac
ctgcagtcaaaccctgggccttctacgcccagaattgaatcaactactgctagtgaacat
gaagtgggtcattttactgatttcgatgaaaagattcgaaaaaccgatatgcctgaacgc
atgcaattacgtaacgttcccattacttctgtcgaagaaggttctgctgaattggattta
gaagccgagtggatacacaagcatgctttttccaaagcatccatttcaaatcaggacggt
acggcagatggacgggaagatgtgataaagggacctaagactgtcgaaaagattcgtaaa
gctcttgaactcattcgcaatcaacacttcgaagtcccttttatagccttctatcgtaaa
gaatacgtcctaccagaattgagcgtgtatgacctttggagagtctacaagtttgatgaa
aagtggacccaactgcagacacgtaaaaacaacatgatgcgactcttccagaaaattcaa
aaatatcgatcggagaagcccaatgagaacgtgcgtgttcttaaagatgaagacatcgat
agattgagaatggtccaatccattgaagaattgagcgacgtttacaatcacttcaccctt
tactacggcaatgatgtacttgccatgcgagaagaataccgtcgaaactcagcagccagg
caaagattgaacgaagacggtgaacttatggatgccgacgatatgaaagaagacttgcac
gacccggatgaagacttatactctcgtggcgccagtgctggtcttgatgggttgctaagg
aaatacggtttatctcgcatcgagcagttcgccgacaattaccaacgacacgacattcat
caaagtcaaacaacaaaagatccttgcgatgttgccctcgaatatgccttctccaagttt
ccaaacgttgctgaatttctcaaagcggcaaactacatgttggctgtacaaatcgctaaa
gaaccttcggttcgtaagtttgtccgtgaatctttctttgaacgcgctcgttttgatgtc
atccctacgaaggaaggcttgaagaaaatcgacgagatgcacaacctttattctctcaaa
ttccttaaaaacaagccagtgtgggatttagtcaatgatcaattcctccgactgtgggtc
gctgagcaagacaagttgctaaccattgtcttcccaacgaaaattgaaggagccattacc
gccagttacgttgacgagataataaaggcactccttacccgcgacgaatccagcaaactc
gtacaggaattgaatgttcagcgtaaagaaatcatcgatcttgccctcagtaaatttgtg
ttaccgtcgatggtcaaagaactcaaggcaaagctgttgaacgaagcccaagaatttgtt
aagagagcttgctgccaacaattatacaattgtctcaacgtggccccttacgaagtcaac
tttggtgacaaagaggacaaggacactacagatggaattagaatcctgggtctcagctat
ggagaagatcagatagtttatggttgtttgatcaaaggcgatggtgagtgttccaaccaa
attcgtctggaacacattctgaagcgcaaaaatgctgagaaggagaaggatcgcactgac
aaagagaagaacctcaaaatgttaaagtattttatctccagtgggatgccacatgcgatc
gccgtgagtgccgagtctcaggaagccacgcagctggttgaagattcgcgatcaataata
tctgagcttgtcaaggaaaagaagtgtccaacgatcgatgtctttctggtcgacaacagt
tttgccaaagtgtttgcaaagtcgactggggccgaaagtgaattccctcaacgtccgctg
ttgttgcgtgaagccattagcattgccaggcaatttcaggaccctctcgttgaattttcg
caactctttaattccaacgaagacatcgtcaatatcaaatttcattctatgcaagatcaa
ctatccaaaaaagaacttttggaaggtctctatcttgaatttgtgaaccgaaccaacgaa
gttggtgttgacatcaatcgcgccatcaaacacccacgcacggcgcatttgattcaattc
atatgcggtctcggaccccgaaaagctgaccaattgatccaaaccctcttaaaaaacaag
aaccagcgactagaaaatcgaacacagttggttactgcttgtcacatgggtccaaaggtg
ttcactaactgcgctggcttcataaaaatcgacacacatttgtcgggtgacggtgccgag
ccgcaggtcgaactgctagatggttctcgtgtccatccggaaaggtacgattgggctcgt
gatttcgccgttgctgctctcaagtaccatggtgaaaaatatgtcgaccctggtggtgct
gtgaaaaagattctggaagccccccaaaagctcgaaggtatcaatttggatgtggcagtt
gatcagtgtgagcgtcaaggtttcggcaacgcacgaaatactttggaacacattcgctct
gaactactccatctctacaaggatggtcggccgtcatatcaagcgccctcacatgaagaa
gatatcttcaacatgattaccaaagaaactccgcaaaccttttataagggcaaaatggtc
ttggcaaccgtcaccggcttcctacgtcgtaaacccaagcgagaagaactggacaaagcc
aatccaaagaaaaacgaaaccaccggcttgtggcaatgcccattttgtctgcagaatgat
ttcactgatctgtcaggagtttggaatcattttgatgctggatcttgcagtggtcaggcg
attggtgtgagcatctgcttggagaatggactgtctggatttcttcctatgaagtgcctc
tctgattctaaaatcaccaatccggaagaacgtgtccgtgtaggacatacgatccattgt
cgcatcaccaagattgatgtcaaacgcttttccgttgatgtcacttcaaaagcttccgat
ttggatgacataaatggtgtatggcgcccaccaaaggatgcctactacgatggaccagct
gaaaaggccatgctgaaggcagaagaggatgccaaaaagcttcgtcaaaagaacacagaa
agtatcattgctcgaccggcttcaacaacaccatcaaatacaaccgaaaggaggtcaggg
ggtccctcgtcccgttccaggtcacgcagtccgaatcggggccggactgcccgtacgatc
ggatcgagcagcagaagtcgatcaccgttgcatcaatcatcaccgttgagacgtccgtca
cctcgtctccctgcttttccgccggtcggagcccctgccccagcattgatcgtcgctccg
ccctggttccacaatatgcaatgcccacatttcaaagatcatagtcaatgcccgaggggc
aatctctgcccgtatgtcaccggtccataccagccggatctgcagttaatggaagcatta
aacatgcccggaagagatccaccacaaaatcctcagtag
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