Daphnia pulicaria: 124314224
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Entry
124314224 CDS
T08670
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpz04147
]
124314224
00535 Proteoglycans [BR:
dpz00535
]
124314224
00536 Glycosaminoglycan binding proteins [BR:
dpz00536
]
124314224
Exosome [BR:
dpz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124314224
Proteoglycans [BR:
dpz00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124314224
Glycosaminoglycan binding proteins [BR:
dpz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124314224
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
124314224
NCBI-ProteinID:
XP_046635325
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All DBs
Position
1:26777625..26805790
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AA seq
1128 aa
AA seq
DB search
MLSVKLLLLMAATLIRATWSQHNAGLLDGEPIHHDLLKAIEVPLRDEEHITFGTGVDGFP
AFVLFRGHDIKIPYKVLLPDKLYSDFSILVTIKPDNNEGGYLFAVVDPLETLVQFGLRIG
PAAGPGQSELSLYHTHPEDRFVSKVLAKFLVPNFAKKWTRFAFRVLDSGLGVPNVTLFFN
CIEYGSLLITSVAWKEQLTFDTASTLYIGQAGGLLQPPGEFVGTIQELKLTNEPSLASVQ
CEDILPFSGDGSGDFVDIDDDSLVDLESEGEEPDAGSGGVGLSSIDKKPPSSTAGVVDPS
QLLPPCSPPLLPPPPPVSSDAVGIVREMHGMQNGFRCTEKGEPGERGEKGDKGSSIDGGG
GVCGCNESSIIAKLAEQVKQGPPGVDGKPGMTGIPGAQGQMGPTGPEGPAGEKGERGDSG
PVGKEGPSGPKGEPGRDGLPGIPGNPGQPGPPGVASGPLVLEDGFGSGFGATLGRPGSPG
PKGDAGVNGKPGPRGERGDPGPKGERGGKGETGNDGERGHPGKDGTHGTKGDVGAPGLDG
MPGLPGETGRSGSKGEAGERGLPGPPGPASALQLDDFDTGSGGGPLPGSSRWPKGEKGSP
GDKGDRGADGKTGHMGPKGDAGEPGLPGPKGDIGPVGPIGPAGPPGPTSVIPSLGGMKGD
QGDRGKRGKPGPPGPPGPAGPSGDIGIPGYQGRIGRPGPVGPPGLPGVKGEPGSISGFLG
GSQGPKGDSGAPGRPGTPGTNGRDGLPGPPGLPGPASSSAPYHHPHPGPPGPPGPPGPPG
PPSGSSSKPGSSSSSQGGEESQKVVVPGAITVTNMEALFKISDISPVGTIAYLYEEESLL
VRVRKGWQYISMGNFVPLPTPTTTTIPPPTTLKPSAPSAAENLVPRIAEGPSDEEMWQDG
PVKPSLRLVALNEPLSGDMGGIQRVDYACFRQARQAGLRGTFRAFLASRVQNLDTIVRSS
DREFPVVNLRGEVLFRTWNDLFRGGRASEFASAARQQRHDIYSFNNRNIFNDIVWPQKVV
WHGAGPSGERQLDSYCDAWTSSDAKTLGVAASLIASSPSSHQQQQQTGGSGGGKLLAQDK
FSCQNRFVVLCIEATSQGVATGGSGRVKRTAEHIISEDHYQAHLQSLF
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgttgagcgtgaagctcttgctgctgatggcagccacgctaattcgagccacttggtcc
cagcacaatgccggtcttttggatggcgagccgatccatcacgacctgctgaaagccatt
gaagttcctctgcgagacgaagaacacatcacgttcgggactggtgtagatggattcccg
gctttcgttctctttcgtggccacgatattaaaatcccctacaaggttctcctgcctgac
aagctctactctgacttttccattctcgttaccatcaaaccagataacaatgaaggtggt
tatctctttgccgtggttgaccctctggaaactctggtccagtttggtctgcgaatcggc
cctgctgcaggcccaggccagagtgagctctccctctaccacacccacccagaagaccgt
tttgtttccaaggtgttggccaagtttctggtgcccaatttcgccaaaaagtggactcga
ttcgcctttcgtgtgctggacagcggcctgggcgtgcccaacgtgactctcttcttcaac
tgcatcgagtacggcagtctactcatcacgagcgttgcatggaaagagcagctgaccttt
gacacggcctcgactctttatataggccaagccggaggcctgctccaaccacccggagag
tttgtgggcaccatccaggagctgaagctgaccaacgagcccagtttggccagcgttcaa
tgtgaagacatccttccgttttccggagatggttccggcgattttgttgatatcgacgac
gattccttggtggacttggaatcggagggagaagagccggacgctggatcgggtggtgtt
ggcttgtcatccatcgacaagaaaccgccgtcgtcgacggccggagttgtcgatccatcg
caactcctcccgccctgttcgccacctctcctgcctccacctccgccagtctcatccgac
gccgtcggaattgtccgggaaatgcacggaatgcagaacggattccgctgcaccgagaag
ggcgagccgggcgaacgcggagagaaaggagacaagggctcatccatcgacggaggcgga
ggcgtttgcggctgcaacgagagttccatcatcgccaaactggccgagcaagtcaaacag
ggtccgccgggcgtcgacggcaaacccggcatgacgggcattccgggagctcaaggtcag
atgggaccgactggacctgaaggcccagctggagagaaaggagaacgcggagatagcggc
ccagttggcaaagaaggtccttccggacccaaaggcgagcctggtcgtgatggactcccc
ggcattcccggcaaccctggacagcctggaccaccgggtgtggctagcggaccactggtc
ctcgaagatggatttggttcgggattcggggctactttgggccgacctggaagccctgga
cctaaaggtgacgccggtgtcaatggcaaaccgggaccgagaggcgaacgcggtgatcct
ggtcctaaaggcgaacggggcggtaaaggcgaaactggaaatgacggagagcgaggccat
ccgggcaaggacggaactcatggaaccaaaggagacgttggagcgcccggtctggatgga
atgccgggattgcccggtgagacgggacgatccggttcgaaaggtgaagccggtgaaaga
ggattgcctggacctccaggacctgctagcgcattgcaactggacgatttcgataccgga
tcgggtggcggacccttgccagggtcttccaggtggcccaaaggcgaaaaaggaagtcca
ggcgacaaaggagatcgaggtgccgatggaaaaacgggccacatgggtcctaaaggcgac
gctggcgagcctggattgccaggacccaaaggcgatatcggccctgtgggcccaattggt
ccagctggaccaccaggacctacttcagtcattcccagtcttggcggaatgaaaggtgat
caaggagaccgtggcaaacgaggcaaacctggtccgccaggtccacctggtcctgctgga
ccttccggagacattggtatccccggatatcagggtcgcatcggtcgtcctggtccagtt
ggtccacctggtttaccgggagttaaaggagagccaggatccatcagtggattcctggga
ggatcgcaaggacctaaaggcgatagcggagctcctggacgaccaggaactcctggaacc
aacggccgtgatggacttcctggtcctcctggccttccagggcctgcttccagttctgca
ccttatcaccatcctcatcctggacctccaggcccacctggaccacccggacctcctgga
ccccccagcggatcatcttccaaaccaggatcgtcttcgtcgtcgcaaggtggtgaggag
agccagaaggtggtggtgccgggagccatcaccgtcaccaacatggaagctcttttcaag
atttcagacatcagccccgtcggaaccatcgcctatctctacgaggaggagagtcttcta
gtccgcgtccgcaaaggctggcagtacatctcgatgggaaatttcgtgccgttgccgacg
cctacgacgacgacaattccgccgccgaccacattgaaaccgtcggcgcccagcgctgcc
gagaatctggtccccagaatcgccgaaggtcccagtgatgaggaaatgtggcaggacgga
cctgtcaaaccatcgttgcgattggtggcgctgaatgaacccctttccggagacatgggc
ggcatccagcgcgtggactacgcctgtttcagacaggcccgtcaagccggactcagagga
acgttccgagcctttttagcctcgcgtgtccagaatctcgacacgatcgtccgctcgtcc
gaccgtgaatttccagtcgtcaacctgaggggtgaggtgttgttccggacgtggaacgat
ctgttccgcggcgggcgggccagcgaatttgcctctgctgcccgtcagcagcgacacgac
atttacagtttcaacaaccgcaacatcttcaacgacattgtctggccgcagaaggtggtc
tggcacggagccgggcccagcggcgaacgccaactcgactcgtactgcgacgcctggacg
tccagcgacgccaagacgctcggagttgccgcctctctcatcgcttcctctccttcctcc
caccaacagcagcagcagacgggcggcagtggcggtggcaaattgttggcccaggacaag
ttttcgtgtcagaaccgattcgtcgtcctgtgcatcgaagccaccagccaaggggtggcc
accggtggcagtgggcgggtgaagcggacggccgagcacatcatctcggaggatcactac
caagcccaccttcagtcgctcttttaa
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