Daphnia pulicaria: 124314582
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Entry
124314582 CDS
T08670
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124314582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124314582
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124314582
Spliceosome [BR:
dpz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124314582
Complex C
U4/U6.U5 tri-SnRNP related factors
124314582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
DUF1178
Flavi_DEAD
nSTAND3
Reprolysin
T2SSE
Motif
Other DBs
NCBI-GeneID:
124314582
NCBI-ProteinID:
XP_046635733
LinkDB
All DBs
Position
10:complement(4632194..4635852)
Genome browser
AA seq
1013 aa
AA seq
DB search
MSLETWVSDQLIEILDFSDRYTSQFLTSLAHKSSSVNELIEKVRSTDTIDVTNAKVVSFL
SELWGKIPRAAPKVNVERIAAKQQEQAMLAMIEKNKRYKLIEDSDEEGMAPPPPPVNKKI
KKEKKKSDSSSEDEDEKQRVKDLKERDEFSERLKLKDKDKQRNVVTVGKGFAEAAKRLQM
EAEDKASVIPKLRVESRRKYLEKRKGDKINELEADIFDDEYLFDEQQLTERERKDREYKK
KILSLAKEHDKARELELVQRYHMPDDKRDKAMPDRYVEIDDREKQPHSEQKVWEDARMAT
AQWNFGARDAKQRLQEKGKVHDYDLLLDDTIDFIQTNQLAGTKGIEEQPEVSDIQKKKMS
LQDTRKSLPIFPFREDLLQAVEDHQILIVEGETGSGKTTQIPQYLYEAGYCKDGKKVGCT
QPRRVAAMSVAARVAQEMGKKLGNEVGYSIRFEDCTSERTVIKYMTDGMLLREFLSEPDL
QSYSVMIIDEAHERTLHTDILFGLIKDIARFRPDLKLLISSATLDAEKFSDFFDEAPIFR
IPGRRFPVEIFYTKAPEADYIDACVVTILQIHVTQDSGDILVFLTGQEEIETALESLTER
TRRLGTRIKELLILPIYANLPSDMQAKIFEPTPPGARKCILATNIAETSLTIDNIIFVID
PGFCKQNSYNARTGMESLVVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEENT
VPEIQRVNLGNVVLLLKSLGINDLIHFDFLDPPPHETLALALEQLYALGALNHMGELTKL
GRRMAEFPVDPMMAKMLLASEKYKCSEEIVTIAAMLSVNSAVFYRPKDKAIHADTARKNF
FSPGGDHFTLLNVYNQWVDTDFSTQWCFENFIQHRSMRRARDVREQLVGLVERVEIDMVS
NKEDLVAIGKAVTAGFFYNTSRLSKTGGYKTVKHNQTVLIHPNSSMFEELPRWLIYHELV
FTTKEYMRQVIQIENSWLLEVAPHYYKAKDLEDTTTRKMPKNKGKSRAELGDH
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagaaacgtgggttagcgatcagttaattgagatattggacttcagtgaccgc
tatacttctcagtttttgacatccctggctcataaaagttcttcagtgaatgaacttatc
gaaaaagttcgtagcacagacactattgatgtgacaaatgcaaaagtggtgagttttcta
tcagagttatggggaaagattccgagagctgcccctaaagtaaatgttgaaagaattgcc
gccaagcaacaagaacaagccatgttagcaatgatcgaaaaaaacaagagatataagctg
atagaagacagcgatgaagaaggaatggcaccacctccaccaccagtaaataaaaagatc
aagaaggaaaagaagaagtctgattcaagcagtgaagatgaagatgaaaaacaacgagtc
aaggatttgaaggaaagagatgagttctctgaacgtcttaaactcaaagataaagataaa
cagaggaatgtggttactgtgggaaaaggttttgctgaagctgcaaagaggcttcaaatg
gaggctgaagacaaagccagtgttattcccaaactcagagtggaatcacgtcgaaaatat
ttggagaagcgaaaaggagacaagattaatgaattggaagcagatattttcgacgatgag
tacttgtttgatgagcaacaactcacggagcgtgaacgaaaggatcgtgaatacaagaaa
aaaattctcagtcttgcgaaagaacatgacaaagcacgagaattggaattggttcaacga
taccatatgcccgatgataagcgggacaaagcaatgcctgataggtacgtcgagatagat
gaccgtgaaaagcaacctcattccgaacaaaaagtttgggaagatgctcgcatggccact
gctcagtggaatttcggtgccagagatgcaaaacagcgtcttcaggagaagggaaaagtt
catgattatgacctcttattggatgacaccattgactttatccaaacaaaccaacttgca
ggaaccaagggtatcgaagaacaacctgaggtaagcgacatccagaaaaagaaaatgtct
cttcaggatacgaggaaatcgcttccaatatttccgtttcgcgaagacttactccaagcc
gtcgaagaccatcagatcctgatcgtggaaggagagactggatcaggaaaaacgacgcaa
attccccagtatctgtacgaagcgggatactgtaaagatggcaagaaagtcggttgtacc
caaccacgtcgagttgcagccatgagtgttgctgctcgtgtcgcccaggaaatgggcaag
aaacttggtaacgaagtaggctacagcattcgctttgaagattgcacgtcagagaggact
gttatcaagtacatgactgacggtatgttgctgcgtgaatttctctctgagcccgatttg
cagagctatagtgtcatgattattgacgaagcccacgagcgaacactccataccgatatc
ctttttgggctgatcaaggatattgcacggtttcgacctgatttgaagctgctaatttcc
agtgctacattggacgctgaaaagttttccgatttcttcgacgaagctcctatatttagg
attcccggtcgaagattcccagtcgaaattttttacaccaaagctccagaggctgattat
atcgatgcttgcgttgtcactattctacagattcacgtcactcaagactcgggtgacatt
cttgtctttcttactggtcaagaagaaattgaaacggcactggagagtctgacagaacgt
acccgaagattgggcaccaggatcaaagagttgctcattcttcctatctacgccaattta
ccgtcagacatgcaggcaaaaattttcgagccaacgcctcccggagcgcggaaatgcatt
ctggctacgaatatcgcagaaacgtctttgactattgacaacattatcttcgtcattgac
ccaggcttttgcaagcaaaattcctataatgcccgaactggcatggaatcccttgttgtc
gttcctatttcgaaagcgtcggcgaatcaacgagctggacgtgctggacgtgtagcagct
ggcaaatgtttccgcctatacacagcatgggcctacaagcacgagctcgaagagaacact
gtgccagaaattcagcgagttaatttaggcaacgtcgttctgcttctcaaatcacttgga
atcaacgatttgattcactttgactttttggatccgcctccgcacgagactttggctttg
gcactggaacaactctacgctctaggagccctgaaccacatgggcgaattgaccaagctg
ggcaggcggatggctgaattccccgttgatcctatgatggcgaaaatgctcctggcatcc
gaaaagtacaaatgttcggaagagatcgtcaccattgcagccatgctctcagtcaacagt
gcagtcttctatcgacccaaagataaagcaattcatgccgacacggctcgaaagaatttc
ttttcaccgggtggcgaccattttaccttgctcaacgtttacaaccaatgggttgacacg
gatttctcgacgcaatggtgctttgaaaacttcatccagcatcgatcaatgagacgcgca
agggacgtcagagaacagcttgtcggccttgtggaaagagttgaaattgacatggtttct
aataaagaagatttagtggctatcggcaaggcggttacggctggattcttctacaacaca
tcgcgcctgtccaagacgggcggatacaagacagtcaaacacaatcaaactgtgctcatc
cacccaaacagctcaatgtttgaggaacttcctcgttggctcatctatcacgaacttgta
tttactactaaagagtacatgaggcaagttattcagattgagaacagttggcttctggaa
gtggctccgcactactacaaagccaaggacctggaagacacaactactcgcaagatgcct
aaaaataagggcaaatcacgggcggagttgggtgaccattga
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