Daphnia pulicaria: 124314589
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Entry
124314589 CDS
T08670
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
dpz
Daphnia pulicaria
Pathway
dpz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124314589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpz04131
]
124314589
Membrane trafficking [BR:
dpz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124314589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
WD40_CDC20-Fz
Beta-prop_EML_2
zf-RING_2
zf-rbx1
zf-RING_5
zf-RING_11
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
124314589
NCBI-ProteinID:
XP_046635745
LinkDB
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Position
10:complement(4683346..4688812)
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AA seq
1332 aa
AA seq
DB search
MSENGEPQLEVLAASEKEQNVVFETSSLDETASSVDFDLQNENWQLNSLDSSVANSSDSE
EKISLSNSKPSSLPPTPCKRIEHGIILKQLVLKGISSQLMTAQVKLKSKDATCLTVSNWI
GIGTKNGLVLVFDVTQNLKWFLDTLDVLGTKQSSESPNGWGNAISAMAFNCDHSRLLVGN
ACGHILEYDMKDGKLVRTLNDVHPPEAAILHLKFTDLSTLALLCDSGGSVFELGFKRTLG
VRGVDTRCLFSGSRGEVCALEPLRTTDQDLNIGFDFHSKWEPLIVVAMATLSKILIVQIR
PTTKVIYSQLLSGDGRSPPCLGWHFVAVHSQQRGRSIEPVLAYGRHNELHFIQLSVDEER
RRLRYHPLLRFQLDFNLRGLQWLDPRMLALLDSEQQVHVVDIKTQESVDVVDLSGFNLVN
SAPFFKGLATGGNVSEALALVGTEACYNSMASCAGQLLLLCATSLRSVGLRHWDERLDLL
VSQSRPEEAIHLGLRMLNGKAKAMHGLKGTPNQRKRQLRDKEIDILNAYVERVLIPLVMQ
EPSMVSSGRNLSSVIELCIDVCVQLQKQSLLFDEIYQRISSFEVARDCFLQLLEPHFLND
RLQSISPSIMQQFVALYEDKGWLEALESCISHVDVSSLDLHQILTLSHNQGLCHAYLYVH
TRALQDYVSPLEDLMKQLQGAVKLGPPYSEQDLKLGHVILVYISCCLAGRAYPVGEIDED
SRVKVKHQVLTSLTCLHSKRASEDEPPYPYLRTLLEFNTQELLNALSLAFEESEFIGEMG
ARRQQRVIDILVEIMINSSQFSPDQICSLFTFIARQISRSPRHDSIHLERGLFQQLVDLV
CSLSSKETRVQSRFEERQQALLQLLQIKGQLSLGAEDEEKLLEQAQSAKFYRVCEYIYEQ
RQDWEKVFQCYIDDTSRHGDILHFLRNVFTESVASNVQLMERLILKHIQLLVQLNATSLA
VFLAVNKPALIDEAVTALIPFPHERYRFLEAILDLATQDIDGATNTAVLIDDDGHCIAQF
AELMAELEPERLTSYVQLADIPHLPRLLEICRKFSVVEAEAAILERQGEITAAYDLLLGQ
LQGSIKQLFVEKEGWQDFEAASQSVIDFCQRQASSLTEKERERIWLTLLDELLLPQRSLK
GNPDASASIISGLREVTQKVVTSIQGQISLTKVLPRLIEDPETTGGTLGDLRQLIMGLLD
NYTYETTLLRISTRLLQGDVHSLLSQRYRQSRKGIALRASRCSSCNRLLQSGRNPSITAF
QCRHAFHSSCLRGEIKQCIRCQPTPIIAEPEQDDSTVSNQEQLPVSQLSPAQLDSIYKAR
IGLSSALQNLFE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagaatggagaaccacagcttgaagtattggctgcatcagaaaaagaacaaaat
gttgtgtttgaaacctcttcccttgatgaaacagcctcatcagtagactttgatcttcaa
aatgagaactggcaactcaacagcttagactcatctgtggcaaactccagtgacagtgaa
gaaaaaatttctctctcaaattcaaaaccttcttctttgccaccaacaccatgtaaacgt
attgaacatgggatcatacttaagcagcttgtattgaagggcatttcatcccaattgatg
actgctcaggtaaaattaaaatccaaagatgcaacatgtctaaccgtttccaactggatt
ggtataggcacaaaaaatggtttagttttggtgtttgatgtcacacaaaatttgaaatgg
tttttggacacacttgatgtccttggaacaaaacagtcaagtgagtctccaaatggatgg
ggaaatgccatttcagcaatggcttttaactgtgatcatagtagactgttggttggaaat
gcttgtggccacattctagagtatgatatgaaagatgggaagctagtcaggactttaaat
gatgtccacccacctgaagcagctattcttcatttaaaatttacagatttgtctactctt
gctcttctgtgcgatagtggaggtagtgtttttgaacttggttttaagaggactttggga
gttagaggcgttgacacccgatgcctattttcgggaagccgaggcgaagtctgcgcttta
gaaccgttgagaactacagaccaagatttaaacatcggcttcgattttcactctaaatgg
gaaccgttgatagttgttgccatggctacactttccaaaattttaatagtgcaaatacgg
ccaaccactaaagttatctacagccaactgttaagcggggatggtcgaagccctccttgt
cttggttggcactttgtagctgtccatagccagcaacgaggaaggagcatagaacccgtt
ttggcttatggtcggcataatgaacttcacttcatccagttaagcgttgatgaagaacga
cgtcgactccgctatcatcctcttcttcgtttccaacttgactttaatcttcgtggatta
cagtggcttgatcctcgtatgctcgctttattagattctgagcagcaagtccatgttgta
gacattaaaacccaagaatctgttgatgtcgtcgacttgtctggctttaatttagtcaac
tcagctccgttctttaaaggtttggcgactggtggtaacgtcagtgaagctttggctctt
gttggaaccgaagcgtgctacaactcgatggccagttgcgctggtcagttattattactc
tgtgcgaccagcttgcgttcggttggtctacgacattgggacgaaagattggatttgctc
gtttcgcagtcacggcctgaagaagccatccatctaggtttgcgcatgttgaacggtaaa
gctaaagccatgcacggattaaagggcaccccgaaccagcgtaaaagacaattacgagac
aaggagattgacattctcaatgcttacgttgaacgagttttgattcctcttgtaatgcaa
gaacccagtatggtcagcagtggccgaaatcttagttcagtcatcgaattgtgtatcgac
gtttgcgttcaacttcaaaaacaatcgttgctttttgatgaaatttatcaaagaatttcg
tcgttcgaagtggcccgagactgcttccttcaactgttagaaccccactttctcaacgac
cgtttgcaatctatctcaccttctattatgcagcaatttgtagccctttatgaagataag
ggctggcttgaggctctggagagctgcatcagtcacgtcgatgtctctagtttggatctg
catcagattctgacgttgtcgcacaaccaggggttgtgtcacgcttacctttacgtgcat
acacgggcgcttcaggattacgtcagtccgctggaagatctgatgaaacagttgcaagga
gcagtcaaattaggtccgccgtattctgaacaagatctcaagttgggccacgtcatcctg
gtctacatctcatgttgtttggctggcagggcttatcccgttggagaaattgacgaagat
tcccgtgttaaagtcaaacatcaagtgctaactagtctgacgtgcctgcacagtaaacga
gcttcggaggatgagcctccatatccatacctgcgcactctactagagtttaatacccaa
gaattactcaatgctctttcattagcttttgaagaatctgaattcattggcgagatggga
gcaagacgccagcagagagtaatagacattctggttgaaattatgatcaactcgtctcag
ttttcgccggatcagatttgctctcttttcacattcattgctcgtcaaataagtcgctca
cctcgccacgactctattcatttagagcgtggtctttttcagcagcttgtagatttggtc
tgctctttgtcttctaaagagactcgagttcagagtagattcgaagaaaggcaacaagca
ctgcttcaacttcttcagattaaaggccagctatcattgggagcagaagatgaagaaaag
ctacttgaacaagctcaatccgctaaattttatcgtgtatgcgagtatatctacgagcag
cgccaagattgggaaaaagtgttccagtgctacattgacgatacctctcgccacggcgac
attcttcacttcctgcggaacgttttcaccgaatctgttgcatccaatgtccaactgatg
gaacgattgattttgaaacatatccaacttctagtccaactaaacgcaacttcattggcc
gtctttttggctgttaataaacctgcattaattgatgaggcggtcactgccctgatacct
tttccacacgaacgatatcgttttcttgaagctattcttgatttggcgactcaagatata
gatggggcaaccaatactgctgttttgatcgatgatgacggtcattgtattgcgcaattt
gctgaacttatggcggagctagagccggagcgacttacgtcttacgtccaactagccgat
atcccacatctgccgcgtttgttagaaatctgtcgcaagttttctgttgtcgaagctgag
gcggcaattcttgaacgccaaggagagataacagccgcttacgatttactactcggccag
cttcaaggttccatcaaacaactctttgttgaaaaagagggttggcaagacttcgaggct
gcttctcaatcagtaattgatttttgtcagcgacaagcaagttctttaacagaaaaggaa
cgtgaaaggatttggttaacccttctcgacgaattgcttcttccgcaaagaagcttgaag
ggaaatccggatgcttccgcttccatcatctcaggtttgagagaagttactcaaaaagtc
gtgacaagcatccagggtcaaataagcttgactaaagtgttacctcgtttgattgaggat
cccgaaacaacaggaggcactttaggggatcttcgccaacttataatgggtcttttggat
aactacacgtacgagacaacattactacggatcagcacgcgactgcttcaaggggatgta
cacagtttactgtctcagcgctaccgccagtcacggaaaggtattgcgttgcgtgcgtcc
cgctgcagcagctgtaatcgtctgcttcaaagcggccggaatccgtccattactgcattt
caatgtcgtcacgctttccatagcagctgcttacgaggggaaatcaagcaatgtatccgt
tgtcagccgacgccgatcattgcagagccagagcaagatgattctactgtctctaatcaa
gagcagttgccagtttctcagttgtcacctgctcagctggattcgatctacaaggccaga
atcggattgtcctctgcattacagaacctattcgagtga
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