Daphnia pulicaria: 124314628
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Entry
124314628 CDS
T08670
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03020
RNA polymerase
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124314628
09124 Replication and repair
03420 Nucleotide excision repair
124314628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124314628
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124314628
Enzymes [BR:
dpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124314628
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124314628
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124314628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
124314628
NCBI-ProteinID:
XP_046635815
LinkDB
All DBs
Position
10:6038631..6042719
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPIEDEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPAIDLQAEAQHSSGEVENPPRYVLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLTY
SAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMNDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTSTLYVNML
ARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQ
KFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATG
VVEYIDTLEEETAMIAMSPEDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLQYPQKPLVTTRSMEYLRFRELPAGINSIV
AILSYTGYNQEDSVIINASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGM
RNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSE
TGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
LTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLQEYGY
HLRGNEVLYNGHTGRKLSAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR
DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANLRNNTFECKGC
KNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaagacgaagatccgatcgaggatgaagatggcgaggaaatctcatcagag
ctttggcaagaagcctgttggattgtcattaacgcatatttcgatgaaaaaggtcttgtg
cgacaacagcttgattcgtttgatgaatttatacagatgtctgtacaaagaattgttgaa
gattcacctgccattgaccttcaggcagaagcccagcattcttcgggggaagtagaaaac
cctccgagatatgtcctaaaatttgagcagatttacctctcgaaacctacacattgggag
aaagacggtgcgccgacagccatgatgcctaatgaagcaaggctaagaaatctcacctac
tctgcccccttgtatgttgatatcacaaaaactgtgcacaaagaaggtgaagagcaggtc
gagactcagcatcagaaaacattcattggcaaaattcctatcatgttgagatccacttat
tgcctgctgaatggaatgaatgatcgtgatttgtgtgagttgaatgaatgccctctcgat
cctggtggctattttatcatcaacggctcagaaaaagtcttgattgctcaagagaagatg
gccacaaatacagtgtacgtcttcagcatgaaggacggcaaattcgcttacaagacagaa
attcgttcctgcttggaacactcgtcacgtccaacctccaccttgtacgtcaacatgttg
gcacgtggtggtcagggcatcaagaaatccgccatcggccagcgtatcattgccattctg
ccctacattaagcaagaaattcccattatgattgtgttccgagccttaggtttcgtggcc
gatcgagatattctcgagcacatcatctacgactttgaagaccccgaaatgatggaaatg
gtgaaaccttcgctggacgaagccttcgtcattcaggagcagaatgttgccttgaatttc
atcggtgctcgcggtgccaggcctggtgtcaccaaagagaagcgtatcaagtacgcccgc
gagattctccaaaaggaaatgttgcctcacgttggtgtgtccgacttttgcgagacgaag
aaagcctatttcctcggctacatggtccatcgcttgctgctggctgccttgggacgccgt
gagctggacgatcgtgatcactacggcaacaaacgtctggatctcgccggaccgttgatg
gctttcctcttccgagccctattcaaaactttgatgaaagaagtccgaatgtacgcacag
aaattcatcgatcgaggaaaagatttcaatttagaactggccattaagacccgcatcatc
accgacggactccgttactcgttggccacaggcaattggggagaccagaaaaaagcccat
caggcgcgcgctggtgtctctcaggtgttgaaccgattgactttcgcttcgaccttgtca
catttgcgtcgcctcaattcgcccattggtcgtgacggtaaactggccaaacctcgtcag
ctccacaacacgctgtggggaatggtttgtccagccgaaacgcccgaaggagctgctgtc
ggtctcgtcaagaatttggctttgatggcctacatttccgtcggttcccaaccgtcgccc
atcctcgagtttttggaagagtggtccatggagaacttggaagaaatcgctccgtctgcc
attgcggatgccaccaagattttcgtcaacggttgctgggtgggtatccatcgcgacccg
gagcagttgatggccaccctgcgcaaactgcgtcgtcagatggacattatcgtgtctgaa
gtatcgatggtgcgcgacatccaggaccgtgaaattcgaatttacacggacgccggccgt
atttgtcgtccattgttgatcgtcgagaactgcaaattgttgctgaagaagcgccacgtt
gacatgctcaaacagcgcgagtacatcaatttcagctggcaggaactggtggccactggt
gtagtcgagtatattgacactttggaggaggagacggccatgattgccatgtcgcccgaa
gacttgcgccagggtaaagacgcctactgtacgacgtacacgcattgcgagattcatccg
gccatgattttgggagtttgcgcctcgattattccgtttcccgatcacaaccagtcgcct
cgtaacacttaccaaagcgccatgggtaaacaagccatgggagtgtacattaccaacttc
cacgtccggatggacactctggcccacgtcctgcagtaccctcagaaacctttggtcacg
acacgctccatggagtacctgcgcttcagagagttgcccgccggcatcaattcgattgtt
gccattctcagctacaccggatacaaccaggaggattccgtcatcataaacgcttccgcc
gttgaacgaggattcttccgctccgtctttttccgatcctacaaagatcaagagtctaaa
cgatcggccgatcaggaggaaacgttcgagaagcctttccgcgatcattgccagggaatg
agaaatgccatttacgacaagttagacgacgacggcatcattgcacctggacttcgtgtg
tctggcgatgacgtggttattggcaaaacgatcactcttccggagaacgacgacgacctg
gagagcaccactaaaaagttctcgaaacgagacgcgtccactttcctgcgtcactcggag
acgggcattgtggaccaggtgatgctgacgttgaacgccgagggcaacaagttttgcaag
attcgcgtccgctcggtccgcatcccgcagattggcgacaaattcgcctcgcgtcacggt
cagaagggtacgtgcggaattcagtaccgccaggaggatatgccgttcacttgcgagggc
ctgactcccgacatcatcatcaacccgcacgccattccgtctcgtatgacaattggtcac
ttgatcgaatgccttcagggcaaagtgtcggccaacaagggcgaaatcggcgacgccact
ccgttcaacgacgccgtcaacgtccaaaagatctcgaacctcttgcaagagtacggctat
cacctgagaggcaacgaagtgctctacaacggccacactggtcgcaagctcagcgctcaa
gtctttctcggcccgacctactaccagcgtctcaagcacatggtggacgacaagatccac
tctcgagcccgaggtccggtccagatcctcgtccgccagcccatggaaggtcgtgcccgc
gacggcggtctccgattcggagagatggaacgagattgtcaaatcgcccacggagcggct
cagttcctgcgcgagcgtctctttgaagtttccgatccttaccgcatccacgtttgcaac
ctctgcggaatcatcgccgtggccaatttgcgcaacaacacgttcgagtgcaagggctgc
aagaacaagacgcaaatctcccaagttcggctcccctacgctgcaaagctcctattccag
gagctcatgtcgatgaacattgcaccccgtttgatggtcatctaa
DBGET
integrated database retrieval system
