Daphnia pulicaria: 124314638
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Entry
124314638 CDS
T08670
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124314638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124314638
03041 Spliceosome [BR:
dpz03041
]
124314638
03009 Ribosome biogenesis [BR:
dpz03009
]
124314638
03016 Transfer RNA biogenesis [BR:
dpz03016
]
124314638
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124314638
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124314638
Spliceosome [BR:
dpz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124314638
Complex C
U4/U6.U5 tri-SnRNP related factors
124314638
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
Pre-60S particles
Helicases
124314638
Transfer RNA biogenesis [BR:
dpz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124314638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
DUF7785
Motif
Other DBs
NCBI-GeneID:
124314638
NCBI-ProteinID:
XP_046635848
LinkDB
All DBs
Position
10:5308974..5313002
Genome browser
AA seq
1034 aa
AA seq
DB search
MDNIDDLFSVFSEESTVTKPLIGTKKNVTKPETSESIEKPSSSGLKRPINKNDNNDDAPQ
AKTSKMETDEDENVDEKLLMSGPRIAIHTLDTIEQCTHEVAVPPDADYAPLRPYSGPPAK
EYPFVLDPFQKEAILCLQNSQSVLVSAHTSAGKTVVAEYAIAMSLKEKQRVIYTTPIKAL
SNQKYREFSEEFKDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVVREVAWVVFDEI
HYMRDKERGVVWEETIILLPDNVHFVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPV
PLQHYIFPGGEGIHLVVDEKGQFREDNFNEAMAVLHTVGDAASGDKRGRRGGIKGGEAGS
SCFKIIKMIMEKNFSPVVVFSFSKKECEFYALQMSKLDFNSNEEKKLVGEVFQNAMEVLS
EEDRKLPQVEQVLPLLKRGIGIHHGGLLPILKETVEILFAEGLIKALFATETFAMGLNMP
ARTVFFTNARKFDGKENRWISSGEYIQMSGRAGRRGLDEKGIVILMIDEKMSPAVGRNLV
KGQADLLNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQQYAAIPHLVENVRQKEKDF
KKFSVPQEEDVSSYYTIRQQLANLNEGLHKYLVKPQYIVPFLQAGRMVHIKNKGDDFGWG
IIVDYKKENLVGKGEDSKNKDLDSSYVVSVLMYISKASTESKVVSALKPCGPKEEGEMRV
VPCFLNLITKISSVRLYFNEDLRPLDNRMEVYKRIQEVHRRFPQGVPLLDPVKDMHIKDK
DFVEMVQRSRAFEERLTAHQLHRDTKVETLCQLYHDKQGLAAQLKHAKDELKKAKSLLQM
TELKCRKRVLRRLGYCTAADVIELKGRVACELSSGDELLLTEMIFNGLFNALDVTQTAAL
LSCFVCDEKSNEMPKLSEALSGPLKQMQDLARRIAKVSVEAKLELEEDEYVEKFKPYMMD
LVAAWCRGSSFGDICKMTDLFEGSIIRCMRRLEELLRQMVQASKSIGNTELENKFSEGIK
LIKRDIIFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggacaatattgacgatctcttcagtgtttttagtgaggaatctactgtaacaaaaccg
ttaattggaactaaaaagaatgtcacgaagccagaaacaagtgaatccattgagaagccc
tcatctagtggtctcaagcgtccaatcaacaaaaatgacaataatgatgatgctcctcaa
gcaaaaacttccaaaatggagactgacgaagatgaaaatgtagatgaaaaactactgatg
tcaggaccaagaatagccattcacacacttgataccatagaacaatgcacccatgaagtt
gctgttccacctgatgctgactatgctccattgcggccatactctgggcctccagcaaag
gaatatccatttgttttagatccatttcagaaagaagctattctctgtttgcagaattca
caatcagtgctggtgtcagcccacacatcagctggcaaaactgttgttgctgaatatgcc
attgctatgtcgttgaaagagaaacaacgtgttatttacacaactcccatcaaagcttta
agtaatcagaagtacagagaattttctgaagaattcaaagatgtaggtttaatgactgga
gatgttactatcaacccaacagcctcttgtttaattatgaccactgagattttaaggagt
atgttgtatcgtggctcagaagtcgtgcgtgaggtggcatgggtggtttttgacgaaatt
cattacatgagagacaaagagcgtggtgtcgtctgggaagagacaattattctactaccg
gacaatgttcatttcgtctttctctcggctacgatcccaaatgcacggcagtttgccgaa
tggatttgtcatttgcacaaacagccatgccatgttgtgtacaccgattatcgaccagtt
ccgctccagcactacattttccctggcggagaaggtattcatctcgttgtagacgaaaag
gggcaatttcgagaagataactttaatgaagcaatggcagttctgcacacggttggagat
gctgcatctggcgataaacgtggtcgacgtggtggaattaaaggtggtgaagccggttcc
agctgcttcaaaattatcaaaatgattatggagaagaacttttcacctgtcgttgttttc
agctttagcaagaaagaatgcgaattttacgcattacaaatgtcaaaattggatttcaat
tcaaatgaagagaaaaagttagtgggtgaagtctttcaaaatgccatggaagtactgtcg
gaagaagacaggaaattaccacaagtggaacaggtcctccctcttttgaaaagaggaatt
ggtattcatcacggaggtctactaccgattttgaaggaaaccgtagaaatcctttttgct
gaagggcttatcaaagccctattcgcaaccgagacgtttgctatgggtctcaacatgcct
gctcgcactgttttcttcaccaacgcccgcaaattcgatggcaaagaaaatagatggatt
tcatctggagaatacattcaaatgtctggtcgtgctggtcgacgtggtctcgacgagaaa
ggtatcgttatcctgatgatagacgaaaaaatgagccctgcagtcggtcgcaatttggtg
aaaggccaagcagatcttctcaactcggcattccatctaacatacaacatggttctaaac
ttgttgcgcgttgaagaaatcaatccagagtacatgctggagcgttcgtttttccagttt
cagcaatatgctgccatcccgcatttggtagagaatgtaagacagaaggaaaaggatttc
aaaaaattctctgttcctcaagaagaggatgtttcttcctattacacaatccgacagcaa
ctggctaacttgaacgaaggtctccataaatatttagtgaaacctcagtacatcgttcct
ttcttgcaagccgggcgtatggttcacatcaaaaataagggtgacgactttggctgggga
atcattgtcgattacaagaaagaaaatttagtaggaaaaggagaagacagtaaaaataag
gatttggacagttcttatgtcgtcagtgtccttatgtacatctccaaagccagcacagag
agtaaagtagtttctgcattgaaaccttgtgggcccaaagaagagggagaaatgcgagtc
gtgccttgtttccttaatcttatcacaaagatcagttctgtccgtctctatttcaatgaa
gatcttcgcccactcgacaaccgtatggaagtctacaaaaggatccaggaggttcacaga
cgtttcccacaaggtgttcctctcctcgaccctgttaaggacatgcacattaaagacaaa
gattttgtagagatggtacagcgctcacgagcttttgaggagcgtttgacagcccaccaa
cttcatcgcgataccaaagtcgagaccctgtgccaactctaccacgacaaacaagggttg
gctgcccaactgaaacacgccaaagacgagttaaagaaagccaaatcccttttgcaaatg
acggagctgaaatgccgcaaaagagtattacgccgtctcggctactgcactgcggctgac
gttattgaattgaaaggtcgcgtggcttgcgaattgtctagcggcgatgagctgttgcta
accgaaatgatattcaacggactgttcaatgcactcgatgtgactcaaacagctgcgcta
ctcagctgcttcgtctgcgatgaaaaatccaacgagatgcccaaactttccgaagcatta
tcaggtcctctgaagcagatgcaggatctagcccgaaggatcgccaaggtgtcagttgag
gctaaactggaactggaggaagacgagtatgtagagaaattcaagccttacatgatggat
ttggtcgctgcctggtgtcgcgggtcttcattcggtgacatttgcaaaatgactgatctc
ttcgaaggaagcatcattcgttgtatgaggcggttagaagaattacttcgtcaaatggtg
caagcatctaaaagtataggaaataccgagttggagaacaagttcagcgaaggtatcaag
ctcatcaaacgcgacatcatcttcgctgccagtctatatctttga
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