Daphnia pulicaria: 124315047
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Entry
124315047 CDS
T08670
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
dpz
Daphnia pulicaria
Pathway
dpz04140
Autophagy - animal
dpz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124315047
04148 Efferocytosis
124315047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpz04131
]
124315047
Membrane trafficking [BR:
dpz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124315047
Hops complex
124315047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4
zf-RING_Vps41
zf-RING_11
zf-RING_UBOX
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
124315047
NCBI-ProteinID:
XP_046636362
LinkDB
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Position
10:complement(3482991..3487003)
Genome browser
AA seq
984 aa
AA seq
DB search
MTSILDQYEKASKQAGTTVFINTLLENERPMFAKQKVAYTPQYPVHHMCAQSGRIALVLV
NNTLLRIDTQLPDNINELDLNKYLSTGYKIQRLFVDPTGCHILVSAVHKDREKDPEREDN
NAEFVYVHATSAKPRQVTKTKGNFITAVGWCISNTSQTTGPILLGTSKGFIYETEINQSG
TEVYWKQVFDIGRGTGTMITGLEYFRLRSAVEGQSVFGVLVTTMTKLYQFQGNLVNRMED
RPLLQSIFNAYLNVKEKFIEIPSEFPVSRLRLCLANDQPTQVAWMTGNGVLLAQLSDKDG
VLSPQHRMIPYPLPDTPSEPLEMGKKRGHHKFPLEVALTPFHLAMVFYDRLRIICTVNQQ
LVYEDTYDQSFGELRGLTCDGRNKKNQQGPVLWSFADYALFRYTITDESRHIWQMYMEQK
QFDLALQFCGNNNGQKSQVLLQQAHHLLSKHQYEKAAKLYAQTEASFEEVALKFMEIKQE
DALQAFLLEKASRLKGDQRMQLSMLVLWLLELMLRKLGSLKDAGIKTDSPQYQSSWDTLD
RFTEQRRIMDCIKSNLGAVYSLLSSHGLHDVLLHLAGKLKDSHRIMEQHLLDRNYKEALN
VLMESSDPELLYSACPVLLQEQPKETVDMLIYKAHKLELTRVTPLLFAALSDGDARLAKE
IIRFVEHCAYELNCKDRSLHTLLFSLYIRYAPDKTLSYLNGQGEDIKTVPYDAQSALRLC
LAADTSQLQACVLLYRIMGLYQPAVEMALKVDAALARQTADMPEDNEELRKKLWLRIARH
VVEKERDIQRAMAVLQQCNLLKIEDVLPFFPDFTTIDLFKDAISQSLQEYSHHLDTLKEE
MEEATKAADALRHEIQAFRHKSIVVQAGDHCHLCRSPLLTRSAYLFPCGHRFHGDCLLPR
VLATMSQMRRERVADLQRELASLPNNDADSVSLASSSLGLREQLLQDLDDILAADCILCG
EAVIKLIDAPFTSEDDLEAFHGID
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgacatccattctcgaccaatatgagaaagccagcaaacaggctggaacgacggtattt
atcaacacgctcctagaaaatgaacgccccatgttcgccaagcaaaaagtggcgtacacg
ccccaataccccgttcatcacatgtgcgctcagtcgggccgtatagcattagttctcgtt
aacaacactctgctgagaatagatacccaactacctgacaacatcaatgagcttgatctc
aacaaatacctaagtacaggctacaaaatccagagattatttgttgatccaactggctgc
cacatcctagtcagtgcagtgcacaaagacagggaaaaagatccagaacgggaagataac
aatgcagaatttgtctatgtccatgccacttcagcaaaaccacgccaggtcaccaaaacc
aaaggaaactttatcactgcagtcggatggtgcatatcaaacactagtcaaacaaccggc
cctattcttcttggaacctccaagggcttcatctatgagactgaaatcaatcagagtggg
acagaagtttactggaaacaagtctttgatatcggaagaggaacaggtacaatgattact
ggcttggaatattttcgactgcgttcagcagtagagggccagtccgtctttggagttttg
gtaacgaccatgacgaaactgtaccaatttcaaggcaatctcgtcaatcggatggaagat
agacctttactgcaatcgattttcaatgcctatctcaacgttaaagagaaattcattgaa
attccgagcgaattccccgtgtcacgactgcgcctctgtttggccaacgaccagccgaca
caagtcgcttggatgacgggcaacggggtgcttttagcgcagttatcggacaaggacggc
gtgctgagcccgcagcaccgaatgatcccttatccgctgcccgacacgccttctgaaccg
ttggaaatgggcaagaaacgcgggcatcacaaattcccactcgaagtggccctcacccct
ttccatttagccatggttttttacgaccgtctgcgcatcatctgcaccgttaatcagcaa
ctggtttacgaggacacttacgatcagagtttcggagagcttcgaggattaacatgcgat
ggaaggaataagaaaaatcagcaagggcccgttttgtggtcgttcgctgactacgctctc
ttccgttatacaatcactgatgaatctcgccatatttggcagatgtacatggaacaaaag
caatttgacttggccttgcaattttgcggaaacaacaatggccaaaagtcgcaagttctt
ttgcagcaggctcatcaccttctcagtaaacaccaatacgaaaaggcagctaaactttac
gcccagaccgaagcttccttcgaagaagtggctctcaagtttatggaaatcaaacaagaa
gatgccctccaggcgtttttactcgagaaagcgtcccgactgaaaggagatcagcggatg
caactctccatgttggttttgtggcttttagagttgatgcttcgcaaattaggctctctc
aaagatgctgggatcaagacggacagcccacagtatcagagcagttgggacactctcgat
cgcttcaccgaacaaaggcgcataatggattgcatcaaatccaatcttggagcggtctac
agtttgctgtcgagtcacggattgcacgacgtgctgctccacttggcaggcaagctcaaa
gacagccatcggatcatggaacagcatttactcgatcgcaactacaaagaggcgttgaac
gtcctgatggaatcttccgatcccgaattgctttacagcgcctgccccgtgttgctccaa
gagcagcccaaagaaacggtcgacatgctaatctacaaagcccacaaactggaactgact
cgagttactccgcttctgtttgccgcgttatccgacggtgatgctcgattagccaaagaa
attattcgcttcgttgagcattgcgcctacgaactgaattgcaaggatcgatccctccac
acgctgctcttctccttgtacatccgatacgctccggacaaaaccttatcttacctcaac
ggacaaggtgaagatatcaagacggttccgtatgatgctcagtcagcattgagattgtgt
ttggcggccgacactagtcaattgcaagcctgtgttctactttaccgaatcatgggactt
taccagccggccgtggaaatggccctcaaagtggacgcggcattggctcgccaaactgcc
gatatgccggaagacaacgaagagctccgcaaaaagctttggctgcgcattgccagacac
gtcgtcgaaaaagagcgcgacattcaacgggccatggccgtcttacagcagtgcaacttg
ctcaaaatagaggacgtgctacctttcttccccgattttacaacaatcgatcttttcaaa
gatgcaatcagccaatcgctccaagagtacagtcaccacttggacaccctcaaagaagag
atggaggaggccaccaaagcggccgacgctttgcgtcacgaaattcaagcgttccgccac
aaatcgatcgtggtacaggcgggagaccactgtcatttgtgtcgatctccacttttgact
cgatcagcttacctttttccgtgcggccatcggttccacggtgattgtcttctgcctcga
gtcttagcgaccatgagccaaatgcgaagagagcgcgtagctgatctccaaagggaactg
gcctccttgcccaataacgacgcagattccgtttcactcgcttcatcttcacttggctta
cgtgagcaactgctgcaagatctggacgacatcttggccgccgattgcatcctgtgtggt
gaagcagtcatcaagctaattgatgcgcccttcacatctgaagatgatctcgaggcattt
cacggaattgactaa
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